Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BBX44_RS21780 Genome accession   NZ_CP024024
Coordinates   4627749..4628423 (-) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain PARM801     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4622749..4633423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBX44_RS21750 - 4622919..4624253 (+) 1335 WP_003161156.1 aspartate aminotransferase family protein -
  BBX44_RS21755 - 4624324..4624686 (+) 363 WP_003096551.1 cupin domain-containing protein -
  BBX44_RS21760 rpmG 4624820..4624975 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  BBX44_RS21765 rpmB 4624987..4625223 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  BBX44_RS21770 - 4625578..4627158 (+) 1581 WP_023090970.1 ABC transporter substrate-binding protein -
  BBX44_RS21775 - 4627184..4627732 (+) 549 WP_003098290.1 hypothetical protein -
  BBX44_RS21780 radC 4627749..4628423 (-) 675 WP_003096559.1 DNA repair protein RadC Machinery gene
  BBX44_RS21785 coaBC 4628563..4629771 (+) 1209 WP_003098292.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BBX44_RS21790 dut 4629779..4630234 (+) 456 WP_003098293.1 dUTP diphosphatase -
  BBX44_RS21795 - 4630271..4632877 (+) 2607 WP_003114359.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=209746 BBX44_RS21780 WP_003096559.1 4627749..4628423(-) (radC) [Pseudomonas aeruginosa strain PARM801]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=209746 BBX44_RS21780 WP_003096559.1 4627749..4628423(-) (radC) [Pseudomonas aeruginosa strain PARM801]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGTAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCCTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACTGCGCGCCTCAAAGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397

Multiple sequence alignment