Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   BG259_RS11035 Genome accession   NZ_CP018680
Coordinates   2301491..2302066 (-) Length   191 a.a.
NCBI ID   WP_005451499.1    Uniprot ID   A0A9X3MLM3
Organism   Vibrio harveyi strain QT520     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2296491..2307066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG259_RS11010 (BG259_11010) aroB 2296774..2297874 (-) 1101 WP_074050875.1 3-dehydroquinate synthase -
  BG259_RS11015 (BG259_11015) aroK 2297906..2298424 (-) 519 WP_005451507.1 shikimate kinase AroK -
  BG259_RS11020 (BG259_11020) pilQ 2298614..2300365 (-) 1752 WP_005451505.1 type IV pilus secretin PilQ Machinery gene
  BG259_RS11025 (BG259_11025) pilP 2300400..2300915 (-) 516 WP_005451501.1 pilus assembly protein PilP Machinery gene
  BG259_RS11030 (BG259_11030) pilO 2300905..2301498 (-) 594 WP_005451500.1 type 4a pilus biogenesis protein PilO Machinery gene
  BG259_RS11035 (BG259_11035) pilN 2301491..2302066 (-) 576 WP_005451499.1 PilN domain-containing protein Machinery gene
  BG259_RS11040 (BG259_11040) pilM 2302050..2303066 (-) 1017 WP_074050876.1 type IV pilus assembly protein PilM Machinery gene
  BG259_RS11045 (BG259_11045) - 2303245..2305815 (+) 2571 WP_074050877.1 penicillin-binding protein 1A -
  BG259_RS11050 (BG259_11050) oxyR 2305882..2306790 (-) 909 WP_005451495.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22244.63 Da        Isoelectric Point: 9.1586

>NTDB_id=209646 BG259_RS11035 WP_005451499.1 2301491..2302066(-) (pilN) [Vibrio harveyi strain QT520]
MLYHINLLAWRENQREEHRRRFLSLIVLGVIVALGVQWGIGKFYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHS
KILERLKIVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTPRLATMLDNMERSAKLLDVDMHSIV
HGKARFGKEFQTFKVSFMFKDASVKGGNQHG

Nucleotide


Download         Length: 576 bp        

>NTDB_id=209646 BG259_RS11035 WP_005451499.1 2301491..2302066(-) (pilN) [Vibrio harveyi strain QT520]
ATGCTGTATCACATTAACCTCCTTGCGTGGCGTGAGAATCAACGTGAAGAACACCGCCGCCGCTTTCTCAGTTTGATCGT
CTTGGGGGTGATTGTTGCGTTGGGCGTGCAATGGGGCATTGGTAAGTTCTATCAATATCAGCAGGATCAACAACAGCAGC
GCCTTGATTATTTGGCGCACTATATCTCCCAGCTTGATAAACGAATCGAAGCGATGAAGATTGCTGAACAAGAGCACAGC
AAGATCTTGGAGAGGTTAAAGATCGTTGAAGGTTTGCAAAATGGGCGTAATAAGACCACGGAGTTCATGAACCTGATGCC
GTCGGTGATCCCTGAAGGAGTCTACGTCGATAAGATCAAAATGAATGATTATGAAATTGAAATCTCGGGTATCTCTGATA
GTACACCTCGCTTGGCCACCATGCTCGACAACATGGAGCGTTCAGCCAAGCTGCTAGATGTCGACATGCATTCTATCGTT
CATGGTAAAGCGCGTTTTGGGAAAGAGTTTCAGACTTTCAAAGTTTCCTTCATGTTCAAAGACGCCTCGGTGAAAGGAGG
TAACCAACATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

94.241

100

0.942
  pilN Vibrio cholerae strain A1552

60.452

92.67

0.56

Multiple sequence alignment