Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   BBX32_RS01080 Genome accession   NZ_CP018677
Coordinates   207485..208225 (-) Length   246 a.a.
NCBI ID   WP_000076097.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LAC4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 202485..213225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBX32_RS01060 (BBX32_01070) aroB 203027..204109 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  BBX32_RS01065 (BBX32_01075) aroK 204138..204707 (-) 570 WP_000643712.1 shikimate kinase AroK -
  BBX32_RS01070 (BBX32_01080) pilQ 204719..206884 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  BBX32_RS01075 (BBX32_01085) pilP 206947..207474 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  BBX32_RS01080 (BBX32_01090) pilO 207485..208225 (-) 741 WP_000076097.1 type 4a pilus biogenesis protein PilO Machinery gene
  BBX32_RS01085 (BBX32_01095) pilN 208222..208863 (-) 642 WP_000201231.1 PilN domain-containing protein Machinery gene
  BBX32_RS01090 (BBX32_01100) pilM 208863..209921 (-) 1059 WP_032003108.1 pilus assembly protein PilM Machinery gene
  BBX32_RS01095 (BBX32_01105) ponA 210082..212637 (+) 2556 WP_000736686.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27785.55 Da        Isoelectric Point: 4.8357

>NTDB_id=209584 BBX32_RS01080 WP_000076097.1 207485..208225(-) (pilO) [Acinetobacter baumannii strain LAC4]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGFFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTIHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=209584 BBX32_RS01080 WP_000076097.1 207485..208225(-) (pilO) [Acinetobacter baumannii strain LAC4]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTTTTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATTCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.187

100

0.992
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679

Multiple sequence alignment