Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SAV_RS08550 Genome accession   NC_002758
Coordinates   1701507..1702193 (-) Length   228 a.a.
NCBI ID   WP_001802022.1    Uniprot ID   A0A7U7EYP5
Organism   Staphylococcus aureus subsp. aureus Mu50     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1696507..1707193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAV_RS08530 (SAV1586) rpsT 1697421..1697672 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  SAV_RS08535 (SAV1587) holA 1697717..1698691 (-) 975 WP_001282563.1 DNA polymerase III subunit delta -
  SAV_RS08540 (SAV1588) comEC 1698748..1700949 (-) 2202 WP_001557362.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SAV_RS08545 (SAV1589) - 1700954..1701415 (-) 462 WP_000439693.1 ComE operon protein 2 -
  SAV_RS08550 (SAV1590) comEA 1701507..1702193 (-) 687 WP_001802022.1 ComEA family DNA-binding protein Machinery gene
  SAV_RS08555 (SAV1591) - 1702233..1702949 (-) 717 WP_000084830.1 class I SAM-dependent DNA methyltransferase -
  SAV_RS08560 (SAV1592) rsfS 1702952..1703305 (-) 354 WP_001088020.1 ribosome silencing factor -
  SAV_RS08565 (SAV1593) yqeK 1703306..1703890 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SAV_RS08570 (SAV1594) nadD 1703880..1704449 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  SAV_RS08575 (SAV1595) yhbY 1704452..1704742 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  SAV_RS08580 (SAV1596) aroE 1704746..1705552 (-) 807 WP_000666757.1 shikimate dehydrogenase -
  SAV_RS08585 (SAV1597) yqeH 1705566..1706666 (-) 1101 WP_001280137.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25900.65 Da        Isoelectric Point: 9.6751

>NTDB_id=20957 SAV_RS08550 WP_001802022.1 1701507..1702193(-) (comEA) [Staphylococcus aureus subsp. aureus Mu50]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=20957 SAV_RS08550 WP_001802022.1 1701507..1702193(-) (comEA) [Staphylococcus aureus subsp. aureus Mu50]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EYP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

100

1
  comEA Staphylococcus aureus MW2

97.368

100

0.974

Multiple sequence alignment