Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CRM98_RS06710 Genome accession   NZ_CP023867
Coordinates   1268753..1269304 (-) Length   183 a.a.
NCBI ID   WP_002853013.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FDAARGOS_422     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1263753..1274304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRM98_RS06680 (CRM98_06680) ctsT 1263803..1264105 (-) 303 WP_002853046.1 type II secretion system protein Machinery gene
  CRM98_RS06685 (CRM98_06685) proC 1264102..1264833 (-) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  CRM98_RS06690 (CRM98_06690) fliW 1264833..1265222 (-) 390 WP_002852982.1 flagellar assembly protein FliW -
  CRM98_RS06695 (CRM98_06695) - 1265383..1266030 (+) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  CRM98_RS06700 (CRM98_06700) lon 1266047..1268422 (+) 2376 WP_002852988.1 endopeptidase La -
  CRM98_RS06705 (CRM98_06705) rpsR 1268482..1268742 (-) 261 WP_002853032.1 30S ribosomal protein S18 -
  CRM98_RS06710 (CRM98_06710) ssb 1268753..1269304 (-) 552 WP_002853013.1 single-stranded DNA-binding protein Machinery gene
  CRM98_RS06715 (CRM98_06715) rpsF 1269313..1269690 (-) 378 WP_002853062.1 30S ribosomal protein S6 -
  CRM98_RS06720 (CRM98_06720) - 1269777..1270643 (-) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  CRM98_RS06725 (CRM98_06725) rseP 1270636..1271742 (-) 1107 WP_002852927.1 RIP metalloprotease RseP -
  CRM98_RS06730 (CRM98_06730) pgsA 1271739..1272275 (-) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CRM98_RS06735 (CRM98_06735) rdxA 1272400..1273005 (-) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  CRM98_RS06740 (CRM98_06740) - 1273005..1273625 (-) 621 WP_002852938.1 NAD(P)H-dependent oxidoreductase -
  CRM98_RS06745 (CRM98_06745) - 1273689..1274114 (-) 426 WP_002852983.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20710.60 Da        Isoelectric Point: 5.0431

>NTDB_id=209373 CRM98_RS06710 WP_002853013.1 1268753..1269304(-) (ssb) [Campylobacter jejuni strain FDAARGOS_422]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=209373 CRM98_RS06710 WP_002853013.1 1268753..1269304(-) (ssb) [Campylobacter jejuni strain FDAARGOS_422]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361