Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   CRM98_RS05965 Genome accession   NZ_CP023867
Coordinates   1123855..1124520 (+) Length   221 a.a.
NCBI ID   WP_002853205.1    Uniprot ID   Q0P933
Organism   Campylobacter jejuni strain FDAARGOS_422     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1118855..1129520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRM98_RS05935 (CRM98_05935) htrA 1119179..1120597 (+) 1419 WP_002853235.1 serine protease HtrA -
  CRM98_RS05940 (CRM98_05940) - 1120673..1121347 (+) 675 WP_002853196.1 response regulator transcription factor -
  CRM98_RS05945 (CRM98_05945) - 1121344..1122591 (+) 1248 WP_002853241.1 ArsS family sensor histidine kinase -
  CRM98_RS05955 (CRM98_05955) - 1122849..1123097 (-) 249 WP_002853192.1 ribbon-helix-helix domain-containing protein -
  CRM98_RS05960 (CRM98_05960) - 1123108..1123707 (-) 600 WP_002853178.1 bacteriohemerythrin -
  CRM98_RS05965 (CRM98_05965) ciaR 1123855..1124520 (+) 666 WP_002853205.1 two-component system response regulator DccR Regulator
  CRM98_RS05970 (CRM98_05970) dccS 1124513..1125703 (+) 1191 WP_002853219.1 two-component system sensor histidine kinase DccS -
  CRM98_RS05975 (CRM98_05975) groL 1125746..1127383 (-) 1638 WP_002858047.1 chaperonin GroEL -
  CRM98_RS05980 (CRM98_05980) groES 1127404..1127664 (-) 261 WP_002825273.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25633.32 Da        Isoelectric Point: 4.6834

>NTDB_id=209362 CRM98_RS05965 WP_002853205.1 1123855..1124520(+) (ciaR) [Campylobacter jejuni strain FDAARGOS_422]
MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYERYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFM
TSLNTTNDLKQGFDAGCDDYIKKPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGYCYG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=209362 CRM98_RS05965 WP_002853205.1 1123855..1124520(+) (ciaR) [Campylobacter jejuni strain FDAARGOS_422]
ATGGCTGCTAAAATTTTACTTTTAGAAGATGATTTGAGCTTGAGTGAGATCATTGAAGAGTTTTTAAACGATGAGGGATA
TGAAGTATTTTTATGCGATAATGCGCAAGAAGCTTTAGATATGGCTTATGAAAGATATTTTGATCTTTGGATTTTAGATG
TAAAAGTTCCTTTAGGAGATGGATTTTCATTACTTAAAGAATTAAGAAAAAGCGGAAAGCAAACTCCAGCAATTTTCATG
ACTTCTTTAAACACAACAAATGATTTAAAACAAGGCTTTGACGCAGGTTGTGATGATTATATAAAAAAACCTTTTGAACT
TGCCGAGTTATCTATCAGGGTTAAAGCTTTGCTTAAAAGAGCTTTTTCACATAAAAATGAAGATTTTGAAGATTTAGGAG
ATGGATTTAGATTTGAATTTACTACACAAATTCTTTACCATAATAATAAAGCCTTGACTTTACCGAGTAAAGAAATTAAG
CTTTTGTCTTTATTACTTAAAAATAAAAACAACTTTTTAAGTACAGAGAGAATTTTTGAAGAACTCTGGGATTATGATGA
GGAGCCTAGTGAGCTAAGTTTAAGGGCTTATGTGAAAAATTTACGTAAAATTTTAGGAAAAGAAAAAATTATAAATCAAA
GAGGCAGGGGATATTGCTATGGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P933

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae D39

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae R6

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae TIGR4

36.364

99.548

0.362