Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BS467_RS12620 Genome accession   NZ_CP018574
Coordinates   2418407..2418742 (-) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain GLB197     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2413407..2423742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS467_RS12570 (BS467_12575) comGC 2413613..2413906 (+) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  BS467_RS12575 (BS467_12580) comGD 2413899..2414345 (+) 447 WP_017357985.1 competence type IV pilus minor pilin ComGD -
  BS467_RS12580 (BS467_12585) comGE 2414329..2414643 (+) 315 WP_017357984.1 competence type IV pilus minor pilin ComGE -
  BS467_RS12585 (BS467_12590) comGF 2414585..2415082 (+) 498 WP_041091745.1 competence type IV pilus minor pilin ComGF -
  BS467_RS12590 (BS467_12595) - 2415079..2415462 (+) 384 WP_041091746.1 competence type IV pilus minor pilin ComGG -
  BS467_RS12595 (BS467_12600) - 2415523..2415717 (+) 195 WP_008342191.1 YqzE family protein -
  BS467_RS12600 (BS467_12605) - 2415752..2416078 (-) 327 WP_007501224.1 DUF3889 domain-containing protein -
  BS467_RS12605 (BS467_12610) tapA 2416331..2416858 (+) 528 WP_041091748.1 amyloid fiber anchoring/assembly protein TapA -
  BS467_RS12610 (BS467_12615) sipW 2416908..2417480 (+) 573 WP_041091749.1 signal peptidase I SipW -
  BS467_RS12615 (BS467_12620) tasA 2417539..2418339 (+) 801 WP_008342195.1 biofilm matrix protein TasA -
  BS467_RS12620 (BS467_12625) sinR 2418407..2418742 (-) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  BS467_RS12625 (BS467_12630) - 2418776..2418940 (-) 165 WP_008342197.1 anti-repressor SinI family protein -
  BS467_RS12630 (BS467_12635) - 2419125..2419922 (-) 798 WP_017367588.1 YqhG family protein -
  BS467_RS12635 (BS467_12640) - 2419937..2421607 (-) 1671 WP_041091750.1 DEAD/DEAH box helicase -
  BS467_RS12640 (BS467_12645) gcvT 2422169..2423266 (+) 1098 WP_041091751.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=208994 BS467_RS12620 WP_017357978.1 2418407..2418742(-) (sinR) [Bacillus altitudinis strain GLB197]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=208994 BS467_RS12620 WP_017357978.1 2418407..2418742(-) (sinR) [Bacillus altitudinis strain GLB197]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928

Multiple sequence alignment