Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BS467_RS09235 Genome accession   NZ_CP018574
Coordinates   1804345..1804986 (+) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain GLB197     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1799345..1809986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS467_RS09210 (BS467_09215) - 1799679..1800032 (-) 354 WP_019744042.1 hypothetical protein -
  BS467_RS09215 (BS467_09220) degQ 1800538..1800678 (+) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  BS467_RS09220 (BS467_09225) - 1800830..1801744 (+) 915 WP_060832601.1 polyprenyl synthetase family protein -
  BS467_RS09225 (BS467_09230) comX 1801741..1801911 (+) 171 WP_074041927.1 competence pheromone ComX -
  BS467_RS09230 (BS467_09235) comP 1801952..1804264 (+) 2313 WP_035701206.1 ATP-binding protein Regulator
  BS467_RS09235 (BS467_09240) comA 1804345..1804986 (+) 642 WP_007500477.1 response regulator transcription factor Regulator
  BS467_RS09240 (BS467_09245) - 1805010..1805399 (+) 390 WP_017358943.1 hotdog fold thioesterase -
  BS467_RS09245 (BS467_09250) mnhG 1805490..1805864 (-) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  BS467_RS09250 (BS467_09255) - 1805848..1806129 (-) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  BS467_RS09255 (BS467_09260) - 1806129..1806608 (-) 480 WP_017358944.1 Na+/H+ antiporter subunit E -
  BS467_RS09260 (BS467_09265) - 1806615..1808093 (-) 1479 WP_017358945.1 Na+/H+ antiporter subunit D -
  BS467_RS09265 (BS467_09270) - 1808086..1808427 (-) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  BS467_RS09270 (BS467_09275) - 1808427..1808858 (-) 432 WP_060832599.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=208982 BS467_RS09235 WP_007500477.1 1804345..1804986(+) (comA) [Bacillus altitudinis strain GLB197]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=208982 BS467_RS09235 WP_007500477.1 1804345..1804986(+) (comA) [Bacillus altitudinis strain GLB197]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATCATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAACAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGCTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTCCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment