Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   SPY_RS06740 Genome accession   NC_002737
Coordinates   1338328..1339653 (-) Length   441 a.a.
NCBI ID   WP_010922534.1    Uniprot ID   -
Organism   Streptococcus pyogenes M1 GAS     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1333328..1344653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPY_RS06730 (SPy1613) raiA 1337063..1337611 (-) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SPY_RS06735 (SPy1615) - 1337691..1338356 (-) 666 WP_002983685.1 ComF family protein -
  SPY_RS06740 (SPy1616) comFA/cflA 1338328..1339653 (-) 1326 WP_010922534.1 DEAD/DEAH box helicase Machinery gene
  SPY_RS06745 (SPy1617) - 1339709..1340341 (+) 633 WP_009880468.1 YigZ family protein -
  SPY_RS06750 (SPy1618) cysK 1340469..1341410 (+) 942 WP_010922535.1 cysteine synthase A -
  SPY_RS06755 (SPy1619) - 1341428..1341805 (-) 378 WP_002991882.1 S1 RNA-binding domain-containing protein -
  SPY_RS06760 (SPy1620) - 1341805..1343205 (-) 1401 WP_011285657.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  SPY_RS06765 (SPy1621) - 1343242..1343883 (-) 642 WP_010922536.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 441 a.a.        Molecular weight: 49790.35 Da        Isoelectric Point: 10.0009

>NTDB_id=20887 SPY_RS06740 WP_010922534.1 1338328..1339653(-) (comFA/cflA) [Streptococcus pyogenes M1 GAS]
MESIENSYGRLLLESQLPDSAKQLAQPLKSVVILRGKMICQRCHYQLDEEARLPSGAYYCRFCLVFGRNQSDKLLYAIPP
MHFPKGNYLVWGGQLTAYQEMISQQLLINMQNQKTTLVHAVTGAGKTEMIYAAIEAVINTGGWVCIASPRVDVCVEVATR
LSQAFSCSICLMHAESLPYQRAPIIVATTHQLLKFHKAFDLLIIDEVDAFPFVNNIQLHYAASQALKEGGAKILLTATST
RTLERKVNKGEVVKLTLARRFHNRPLVIPKFIRSFNLFKMIHRQKLPLKILKYLKKQRKTGYPLLIFLPTIIMAESVTAI
LKELLPAEQIACVSSQSQNRKEDITAFRQGKKTILITTSILERGVTFPQIDVFVLGSHHRVYSSQSLVQIAGRVGRSIDR
PDGTLYFFHEGISKAMLLARKEIKEMNYKGYSHDLSTMSTN

Nucleotide


Download         Length: 1326 bp        

>NTDB_id=20887 SPY_RS06740 WP_010922534.1 1338328..1339653(-) (comFA/cflA) [Streptococcus pyogenes M1 GAS]
ATGGAGTCTATTGAAAATAGTTATGGACGGTTGTTGCTAGAAAGCCAGTTACCAGATTCAGCAAAGCAGCTTGCTCAACC
TTTAAAAAGTGTAGTAATATTGAGAGGAAAAATGATTTGTCAACGTTGTCACTATCAGCTTGATGAAGAAGCACGATTGC
CAAGTGGAGCCTATTATTGCCGATTTTGTCTTGTCTTTGGACGAAATCAATCAGATAAATTGCTCTATGCTATCCCACCT
ATGCATTTTCCAAAAGGTAATTATCTGGTTTGGGGTGGTCAACTAACTGCTTATCAAGAGATGATTTCCCAACAATTATT
AATCAATATGCAAAATCAAAAAACAACATTAGTTCATGCTGTAACTGGTGCAGGAAAAACAGAAATGATTTATGCTGCGA
TTGAGGCGGTAATTAACACAGGTGGCTGGGTTTGCATTGCCAGCCCAAGAGTAGATGTTTGTGTAGAGGTGGCTACTCGT
TTATCCCAAGCCTTCTCCTGCAGCATCTGTTTAATGCACGCAGAGTCTCTTCCTTATCAAAGAGCTCCTATTATAGTAGC
CACAACGCATCAGCTGCTAAAATTTCACAAGGCTTTTGATCTCTTAATTATTGATGAAGTAGACGCATTCCCTTTTGTAA
ATAATATTCAACTTCATTATGCTGCAAGTCAGGCTTTAAAAGAAGGTGGCGCAAAGATTTTATTAACTGCAACTTCAACT
AGAACTTTAGAAAGAAAGGTAAACAAGGGAGAAGTAGTCAAGCTGACATTGGCGAGACGCTTTCATAATAGGCCATTAGT
TATTCCAAAATTTATAAGAAGTTTTAATCTATTTAAAATGATACATCGGCAAAAACTTCCTCTTAAAATTTTAAAATACT
TAAAAAAACAAAGAAAAACAGGCTATCCCCTTTTAATTTTTCTACCCACTATTATAATGGCAGAATCTGTTACAGCAATC
TTAAAAGAGTTATTGCCCGCCGAACAAATAGCTTGTGTTTCTAGTCAATCACAAAACAGGAAAGAAGATATCACAGCTTT
TCGTCAAGGGAAAAAAACGATTTTAATTACAACATCAATTTTAGAAAGGGGTGTGACATTTCCCCAAATTGATGTTTTTG
TTCTTGGGTCTCATCATCGTGTCTATAGTTCCCAAAGTCTTGTTCAAATTGCTGGACGAGTTGGAAGATCTATAGACAGA
CCAGACGGAACGTTATATTTCTTTCATGAAGGTATCAGTAAAGCAATGCTACTAGCAAGAAAAGAGATTAAAGAAATGAA
TTATAAAGGGTATTCGCATGATCTGTCTACTATGTCAACAAATTAG

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(98-244)

Helicase conserved C-terminal domain (Helicase_C)

(288-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

53.699

95.011

0.51
  comFA/cflA Streptococcus pneumoniae D39

53.699

95.011

0.51
  comFA/cflA Streptococcus pneumoniae R6

53.699

95.011

0.51
  comFA/cflA Streptococcus pneumoniae TIGR4

53.699

95.011

0.51
  comFA/cflA Streptococcus mitis NCTC 12261

52.37

95.692

0.501
  comFA/cflA Streptococcus mitis SK321

51.422

95.692

0.492
  comFA Lactococcus lactis subsp. cremoris KW2

47.98

89.796

0.431
  comFA Latilactobacillus sakei subsp. sakei 23K

39.08

98.639

0.385

Multiple sequence alignment