Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | BS615_RS08385 | Genome accession | NZ_CP018421 |
| Coordinates | 1782968..1783348 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain XDR-BJ83 isolate male patient | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1777968..1788348
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BS615_RS08355 (BS615_08365) | kdsB | 1778871..1779632 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| BS615_RS08360 (BS615_08370) | - | 1779644..1780624 (+) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| BS615_RS08365 (BS615_08375) | - | 1780636..1780977 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| BS615_RS08370 (BS615_08380) | - | 1780995..1781768 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| BS615_RS08375 (BS615_08385) | - | 1781806..1782414 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| BS615_RS08380 (BS615_08390) | - | 1782424..1782978 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| BS615_RS08385 (BS615_08395) | xcpV | 1782968..1783348 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| BS615_RS08390 (BS615_08400) | xcpW | 1783348..1784049 (+) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| BS615_RS08395 (BS615_08405) | gspK | 1784049..1785008 (+) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| BS615_RS08400 (BS615_08410) | - | 1785239..1785835 (+) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| BS615_RS08405 (BS615_08415) | ung | 1785886..1786599 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| BS615_RS08410 (BS615_08420) | - | 1786596..1787720 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| BS615_RS08415 (BS615_08425) | tadA | 1787727..1788230 (+) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=208621 BS615_RS08385 WP_000836911.1 1782968..1783348(+) (xcpV) [Acinetobacter baumannii strain XDR-BJ83 isolate male patient]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=208621 BS615_RS08385 WP_000836911.1 1782968..1783348(+) (xcpV) [Acinetobacter baumannii strain XDR-BJ83 isolate male patient]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |