Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CP957_RS06145 Genome accession   NZ_CP023673
Coordinates   1148275..1149012 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain SMN013SH2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1143275..1154012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP957_RS06110 (CP957_06055) yfiL 1143432..1143797 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  CP957_RS06115 (CP957_06060) aroF 1144007..1145077 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CP957_RS06120 (CP957_06065) tyrA 1145088..1146209 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CP957_RS06125 (CP957_06070) pheA 1146252..1147412 (-) 1161 WP_101974054.1 bifunctional chorismate mutase/prephenate dehydratase -
  CP957_RS06130 pheL 1147512..1147559 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CP957_RS06135 (CP957_06075) raiA 1147663..1148004 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CP957_RS06145 (CP957_06085) comL 1148275..1149012 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CP957_RS06150 (CP957_06090) rluD 1149147..1150127 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CP957_RS06155 (CP957_06095) yfiH 1150124..1150855 (+) 732 WP_062882642.1 purine nucleoside phosphorylase YfiH -
  CP957_RS06160 (CP957_06100) clpC 1150985..1153558 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=208337 CP957_RS06145 WP_000197686.1 1148275..1149012(-) (comL) [Escherichia coli strain SMN013SH2]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=208337 CP957_RS06145 WP_000197686.1 1148275..1149012(-) (comL) [Escherichia coli strain SMN013SH2]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACT
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCACTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376