Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   BSL41_RS04460 Genome accession   NZ_CP018347
Coordinates   781570..782259 (+) Length   229 a.a.
NCBI ID   WP_000518011.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SWU02     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 776570..787259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL41_RS04435 gpsB 776667..777008 (+) 342 WP_000200644.1 cell division regulator GpsB -
  BSL41_RS04445 - 777494..778651 (+) 1158 WP_000711398.1 class I SAM-dependent RNA methyltransferase -
  BSL41_RS04450 mapZ 778664..780058 (+) 1395 WP_000039290.1 mid-cell-anchored protein MapZ -
  BSL41_RS04455 gndA 780134..781558 (+) 1425 WP_000158792.1 NADP-dependent phosphogluconate dehydrogenase -
  BSL41_RS04460 covR 781570..782259 (+) 690 WP_000518011.1 response regulator transcription factor Regulator
  BSL41_RS04465 cbpC 782357..783319 (+) 963 WP_000698035.1 choline-binding protein CbpC -
  BSL41_RS04470 cbpJ 783338..784336 (+) 999 WP_000771128.1 choline-binding protein CbpJ -
  BSL41_RS04475 - 784454..785686 (-) 1233 WP_000765677.1 MFS transporter -
  BSL41_RS04480 - 785729..786316 (-) 588 WP_001822134.1 lanthionine synthetase LanC family protein -
  BSL41_RS12320 - 786216..786605 (-) 390 WP_001865604.1 lanthionine synthetase LanC family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26880.19 Da        Isoelectric Point: 6.9836

>NTDB_id=208225 BSL41_RS04460 WP_000518011.1 781570..782259(+) (covR) [Streptococcus pneumoniae strain SWU02]
MGKRILLLEKERNLAHFLSLELQKEQYRVDLVEEGQKALSMALQTDYDLILLNVNLGDMMAQDFAEKLSRTKPASVIMIL
DHWEDLQEELEVVQRFAVSYIYKPVLIENLVARISAIFRGRDFIDQHCSLMKVPRTYRNLRIDVEHHTVYRGEEMIALTR
REYDLLATLMGSKKVLTREQLLESVWKYESATETNIVDVYIRYLRSKLDVKGQKSYIKTVRGVGYTMQE

Nucleotide


Download         Length: 690 bp        

>NTDB_id=208225 BSL41_RS04460 WP_000518011.1 781570..782259(+) (covR) [Streptococcus pneumoniae strain SWU02]
ATGGGGAAACGGATTTTATTACTTGAGAAAGAACGAAATCTAGCTCATTTTTTAAGTTTGGAACTCCAGAAAGAGCAGTA
TCGGGTTGATCTGGTAGAGGAGGGGCAAAAAGCCCTCTCCATGGCTCTTCAGACAGACTATGATTTGATTTTATTGAACG
TTAATCTGGGAGATATGATGGCTCAGGATTTTGCAGAAAAATTGAGTCGAACTAAACCTGCCTCAGTCATCATGATTTTA
GATCATTGGGAAGACTTGCAAGAAGAGCTGGAAGTTGTTCAGCGTTTTGCAGTTTCATACATCTATAAGCCAGTCCTTAT
CGAAAATCTGGTAGCGCGTATTTCGGCGATCTTCCGAGGTCGGGACTTCATTGATCAACACTGCAGTCTGATGAAAGTTC
CAAGGACCTACCGCAATCTTAGGATAGATGTTGAACATCACACGGTTTATCGTGGTGAAGAGATGATTGCTCTGACCCGC
CGTGAGTATGACCTTTTGGCGACACTTATGGGAAGCAAGAAAGTATTGACTCGTGAGCAATTGTTGGAAAGTGTTTGGAA
GTATGAAAGTGCGACCGAGACAAATATCGTAGATGTCTATATCCGCTATCTACGGAGCAAGCTTGATGTTAAAGGCCAAA
AAAGCTACATTAAAACCGTGCGTGGTGTTGGTTACACCATGCAAGAATAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-226)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

48.261

100

0.485
  covR Lactococcus lactis subsp. lactis strain DGCC12653

46.522

100

0.467

Multiple sequence alignment