Detailed information
Bioinformatically predicted
Overview
| Name | pilF/pilF2 | Type | Machinery gene |
| Locus tag | PM_RS10420 | Genome accession | NC_002663 |
| Coordinates | 2250078..2250623 (+) | Length | 181 a.a. |
| NCBI ID | WP_010907447.1 | Uniprot ID | - |
| Organism | Pasteurella multocida subsp. multocida str. Pm70 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2245078..2255623
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PM_RS10410 (PM2006) | - | 2246309..2248675 (+) | 2367 | WP_010907445.1 | tetratricopeptide repeat protein | - |
| PM_RS10415 (PM2007) | - | 2248855..2250039 (+) | 1185 | WP_010907446.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| PM_RS10420 (PM2008) | pilF/pilF2 | 2250078..2250623 (+) | 546 | WP_010907447.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| PM_RS10425 (PM2009) | - | 2250746..2251702 (+) | 957 | WP_005725132.1 | RodZ domain-containing protein | - |
| PM_RS10430 (PM2010) | ispG | 2251729..2252832 (+) | 1104 | WP_005719572.1 | flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | - |
| PM_RS10435 (PM2011) | hisS | 2252862..2254133 (+) | 1272 | WP_010907448.1 | histidine--tRNA ligase | - |
| PM_RS10440 (PM2012) | - | 2254152..2254763 (+) | 612 | WP_005725137.1 | YfgM family protein | - |
| PM_RS10445 (PM2013) | - | 2254968..2255405 (+) | 438 | WP_010907449.1 | methyltransferase family protein | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 20911.47 Da Isoelectric Point: 7.8913
>NTDB_id=20807 PM_RS10420 WP_010907447.1 2250078..2250623(+) (pilF/pilF2) [Pasteurella multocida subsp. multocida str. Pm70]
MTRVFQVWIASIFSLFLSACVSQEGNKTFDSHEAAKARIELGLGYLSQHDFARAKQNFDKALSHAPNYYLSHAVLAYLYQ
KQGHLDLARHAYEKAIKLDKNQGDVLNNYGAFLCQQGEFEQAYKQFSQALNAPHYYQHADTYENLVWCASFAKDTVRYQQ
NLQHLTQFDPNRAKKFPPHIE
MTRVFQVWIASIFSLFLSACVSQEGNKTFDSHEAAKARIELGLGYLSQHDFARAKQNFDKALSHAPNYYLSHAVLAYLYQ
KQGHLDLARHAYEKAIKLDKNQGDVLNNYGAFLCQQGEFEQAYKQFSQALNAPHYYQHADTYENLVWCASFAKDTVRYQQ
NLQHLTQFDPNRAKKFPPHIE
Nucleotide
Download Length: 546 bp
>NTDB_id=20807 PM_RS10420 WP_010907447.1 2250078..2250623(+) (pilF/pilF2) [Pasteurella multocida subsp. multocida str. Pm70]
ATGACGCGCGTTTTTCAAGTATGGATAGCAAGCATTTTTTCTCTTTTTCTTTCTGCCTGTGTGAGTCAAGAAGGTAACAA
AACGTTTGATTCACATGAGGCAGCAAAAGCCAGAATTGAATTAGGTTTAGGCTATTTATCTCAGCATGATTTTGCGCGAG
CAAAGCAAAATTTTGATAAAGCTTTATCCCATGCCCCAAATTACTATTTATCTCATGCGGTCTTAGCGTATCTCTACCAA
AAACAAGGTCATCTTGATTTAGCCCGTCACGCTTATGAAAAGGCGATAAAATTAGATAAAAATCAAGGCGATGTATTAAA
TAATTATGGTGCCTTTTTATGCCAACAAGGTGAGTTTGAACAAGCTTACAAACAATTTTCTCAAGCATTAAATGCCCCAC
ATTATTATCAACACGCCGATACTTATGAAAATTTAGTTTGGTGTGCGTCTTTTGCCAAAGACACTGTCCGTTATCAACAA
AATTTGCAACATTTAACGCAGTTTGATCCCAATAGAGCAAAAAAATTTCCGCCACATATTGAGTAA
ATGACGCGCGTTTTTCAAGTATGGATAGCAAGCATTTTTTCTCTTTTTCTTTCTGCCTGTGTGAGTCAAGAAGGTAACAA
AACGTTTGATTCACATGAGGCAGCAAAAGCCAGAATTGAATTAGGTTTAGGCTATTTATCTCAGCATGATTTTGCGCGAG
CAAAGCAAAATTTTGATAAAGCTTTATCCCATGCCCCAAATTACTATTTATCTCATGCGGTCTTAGCGTATCTCTACCAA
AAACAAGGTCATCTTGATTTAGCCCGTCACGCTTATGAAAAGGCGATAAAATTAGATAAAAATCAAGGCGATGTATTAAA
TAATTATGGTGCCTTTTTATGCCAACAAGGTGAGTTTGAACAAGCTTACAAACAATTTTCTCAAGCATTAAATGCCCCAC
ATTATTATCAACACGCCGATACTTATGAAAATTTAGTTTGGTGTGCGTCTTTTGCCAAAGACACTGTCCGTTATCAACAA
AATTTGCAACATTTAACGCAGTTTGATCCCAATAGAGCAAAAAAATTTCCGCCACATATTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
50 |
97.238 |
0.486 |
| pilF | Glaesserella parasuis strain SC1401 |
43.85 |
100 |
0.453 |