Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   BSZ04_RS14555 Genome accession   NZ_CP018312
Coordinates   1191694..1193115 (-) Length   473 a.a.
NCBI ID   WP_088880664.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain B64D1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1186694..1198115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ04_RS14530 (BSZ04_14370) - 1187377..1188027 (+) 651 WP_071236205.1 thiopurine S-methyltransferase -
  BSZ04_RS14535 (BSZ04_14375) purT 1188107..1189282 (-) 1176 WP_088880661.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  BSZ04_RS14540 (BSZ04_14380) cdd 1189429..1190316 (-) 888 WP_088880662.1 cytidine deaminase -
  BSZ04_RS14545 (BSZ04_14385) - 1190582..1191259 (-) 678 WP_088880663.1 LrgB family protein -
  BSZ04_RS14550 (BSZ04_14390) - 1191261..1191635 (-) 375 WP_010448702.1 CidA/LrgA family protein -
  BSZ04_RS14555 (BSZ04_14395) sbcB 1191694..1193115 (-) 1422 WP_088880664.1 exodeoxyribonuclease I Machinery gene
  BSZ04_RS14560 (BSZ04_14400) - 1193246..1193941 (-) 696 WP_010448704.1 NAD(P)H-binding protein -
  BSZ04_RS14565 (BSZ04_14405) - 1194604..1195215 (+) 612 WP_010448705.1 flavin reductase family protein -
  BSZ04_RS14570 (BSZ04_14410) cobT 1195235..1196278 (+) 1044 WP_088880665.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  BSZ04_RS14575 (BSZ04_14415) - 1196278..1197084 (+) 807 WP_088880666.1 adenosylcobinamide-GDP ribazoletransferase -
  BSZ04_RS14580 (BSZ04_14420) cobU 1197081..1197614 (+) 534 WP_088880667.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54599.83 Da        Isoelectric Point: 4.8709

>NTDB_id=207998 BSZ04_RS14555 WP_088880664.1 1191694..1193115(-) (sbcB) [Vibrio rotiferianus strain B64D1]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGLRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFP
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKIKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLTNLALLRQHPEIREKLINLFSIEREYEKSDDVDTQLYDGFFSPADRAAMDIIRETDPTNLAALDIEFDDKR
IKPLLFRYRARHYSSTLDDQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=207998 BSZ04_RS14555 WP_088880664.1 1191694..1193115(-) (sbcB) [Vibrio rotiferianus strain B64D1]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGCCCAAG
CCAATTCGCCGGCCTCCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTGATGTACTGTCGCCCACCCGCTG
ATTATCTTCCTTCACCCGAAGCAGCTTTGATCACTGGCATTACACCACAAAAAGCGATGCAAGAAGGTCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAACCAAATACTACTAGCCTTGGCTACAACAGTATTCGATTCGATGA
TGAAGTCACACGTTACACCTGTTACCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGCAACTCACGTTGGG
ATTTACTTGACGTCATGCGCGCGTGTCACGCCCTTCGTCCTGAAGGTGTGGAATGGCCAGAAAATGATGAAGGTTTCCCG
AGTTTCAAACTTGAACATTTATCTGTGGCAAATGGCATCGAACACAGCAACGCTCACGATGCGATGGCAGACGTGATTGC
AACAATTGAGATGGCAAAAAAAATCAAAGCGGCTCAACCTAAGTTGTTTGATTACTTCTTCTCTATGCGTAATAAGCGCA
AGCTTAACGAACTGGTCGATATCGTTAACATGACGCCATTGATGCACGTATCTGGGATGTTGGGACGTGAATGCCAGTAC
ACCAGCTGGATTGTGCCTGTTGCTTGGCACCCAACAAACAACAATGCCGTTATCACTATTGATTTGGCAAAAGATCCACA
GCCAATTCTTGAGCTTTCCGCAGAAGAGTTAAAAGAGCGTTTGTACACCAAACGTGATGAGTTGGGTGACCTACTCCCTG
TACCAGTGAAGCTCGTGCATCTGAACAAGTGCCCTATTCTAGCGCCAGCGAAAACACTCACTGCTGAGAATGCAGAATCT
ATTGGTATTGACCGTCAGCAATGTCTAACTAACCTCGCTTTGTTACGTCAACACCCAGAAATTCGTGAGAAACTCATTAA
CCTATTCTCTATTGAGCGTGAGTACGAAAAGAGTGATGATGTAGATACGCAACTTTACGATGGTTTTTTCTCGCCTGCTG
ATCGCGCGGCGATGGACATCATTCGTGAAACGGACCCAACTAACCTAGCCGCACTGGATATTGAATTTGATGACAAGCGC
ATCAAACCGTTGCTGTTTCGTTACCGTGCTCGTCACTACTCAAGCACACTAGATGACCAAGAGCAAAGACGCTGGGCACA
GCACTGTCGTGAAGTCTTTGAAAGCCAGATTGAAGAGTATATGCTTAATTTAGAGAACTTAGTTCACGAACATGAAAGTG
ACGAAAAAAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.07

100

0.791

Multiple sequence alignment