Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   BSZ05_RS01180 Genome accession   NZ_CP018308
Coordinates   262078..263475 (-) Length   465 a.a.
NCBI ID   WP_062462808.1    Uniprot ID   -
Organism   Vibrio mediterranei strain QT6D1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 257078..268475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ05_RS01145 (BSZ05_01140) moaE 257744..258202 (-) 459 WP_006072953.1 molybdopterin synthase catalytic subunit MoaE -
  BSZ05_RS01150 (BSZ05_01145) moaD 258204..258449 (-) 246 WP_088875951.1 molybdopterin synthase sulfur carrier subunit -
  BSZ05_RS01155 (BSZ05_01150) moaC 258446..258925 (-) 480 WP_006072951.1 cyclic pyranopterin monophosphate synthase MoaC -
  BSZ05_RS01160 (BSZ05_01155) moaB 258942..259454 (-) 513 WP_006072950.1 molybdenum cofactor biosynthesis protein B -
  BSZ05_RS01165 (BSZ05_01160) moaA 259499..260488 (-) 990 WP_088875952.1 GTP 3',8-cyclase MoaA -
  BSZ05_RS01170 (BSZ05_01165) yvcK 260786..261670 (+) 885 WP_088875953.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  BSZ05_RS01175 (BSZ05_01170) luxU 261734..262081 (-) 348 WP_006072947.1 quorum-sensing phosphorelay protein LuxU -
  BSZ05_RS01180 (BSZ05_01175) luxO 262078..263475 (-) 1398 WP_062462808.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  BSZ05_RS01185 (BSZ05_01180) uvrB 263608..265638 (-) 2031 WP_088875954.1 excinuclease ABC subunit UvrB -
  BSZ05_RS01195 (BSZ05_01190) rsxA 266741..267322 (+) 582 WP_006072943.1 electron transport complex subunit RsxA -
  BSZ05_RS01200 (BSZ05_01195) rsxB 267322..267903 (+) 582 WP_088875955.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 51660.90 Da        Isoelectric Point: 5.2425

>NTDB_id=207931 BSZ05_RS01180 WP_062462808.1 262078..263475(-) (luxO) [Vibrio mediterranei strain QT6D1]
MQQLFDEPKSRYLLMVEDTASVAALYRSYLSPLGIDINIVGNGRDAIQSLAHRTPDLILLDLRLPDMTGMDVLDAVKEFN
PDVPVIFMTAHGSIDIAVDAMQHGAQDFLIKPCEADRLRVTVTNAIRKASKLRNEINDSSSQNYQGFIGSSQPMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAASDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSRMKKVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
REEDVIEIAYSLLGFMSHEEGKSFVRFAQDVIDRFIQYEWPGNVRQLQNVLRNVVVLNQGKEIELSMLPPPLNEPAVKPA
NSSNVVSVSFGPQDIQPLWKTEKTTIEQAIEACDGNIPQAAKHLDVSPSTIYRKIQAWNASEKKA

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=207931 BSZ05_RS01180 WP_062462808.1 262078..263475(-) (luxO) [Vibrio mediterranei strain QT6D1]
ATGCAACAACTATTCGACGAGCCAAAGTCTCGCTATCTACTTATGGTAGAAGACACGGCTTCCGTTGCTGCGCTGTATCG
CTCGTATCTATCTCCATTGGGTATAGATATCAATATCGTTGGAAACGGTAGAGATGCAATTCAAAGTTTAGCGCACCGGA
CGCCTGACCTCATTCTACTGGATTTACGACTTCCCGACATGACGGGTATGGATGTATTGGACGCTGTAAAAGAGTTCAAT
CCTGATGTACCTGTCATCTTTATGACTGCTCATGGATCTATCGACATCGCGGTAGACGCTATGCAGCATGGCGCTCAGGA
CTTTTTAATCAAACCGTGCGAAGCCGACCGACTTCGCGTGACGGTAACCAACGCCATTCGCAAAGCCTCTAAGCTACGTA
ATGAGATTAATGATTCTAGTAGCCAAAACTACCAAGGATTCATTGGCAGTAGCCAACCCATGCAGGCGGTTTACCGCACT
ATTGACTCTGCCGCTTCCAGCAAGGCCAGTATCTTTATTACTGGAGAAAGTGGTACAGGTAAGGAAGTTTGCGCAGAGGC
GATCCACGCTGCGAGTAAACGAGGCGACAAGCCATTTATTGCGATCAACTGTGCCGCAATACCAAAAGATCTTATTGAGA
GTGAGTTGTTTGGTCATGTCAAAGGTGCCTTTACGGGGGCCGCAAGTGACCGACAAGGTGCTGCAGAACTCGCTGATGGC
GGCACGCTGTTTCTTGATGAGCTATGTGAAATGGATCTCGATCTACAAACTAAACTACTGCGCTTTATTCAAACGGGTAC
CTTCCAAAAAGTGGGTTCTTCACGTATGAAGAAAGTGGATGTACGTTTCGTATGTGCGACCAACCGAGATCCTTGGAAAG
AAGTGCAAGAAGGGCGGTTTAGAGAAGATTTATACTATCGACTTTATGTTATCCCTCTCCATTTGCCACCGCTCCGAGAG
CGTGAAGAAGATGTGATTGAAATTGCCTACTCGTTATTGGGCTTTATGTCGCATGAAGAGGGTAAGAGCTTTGTGCGTTT
TGCTCAAGATGTCATTGATCGCTTCATCCAGTACGAGTGGCCGGGTAATGTCCGCCAATTGCAGAATGTACTGCGCAATG
TGGTGGTATTGAATCAGGGCAAAGAAATAGAGTTAAGCATGTTGCCGCCGCCTTTGAATGAGCCAGCGGTTAAGCCCGCA
AACTCAAGTAATGTGGTATCAGTATCATTTGGGCCACAGGACATCCAGCCTTTGTGGAAAACTGAAAAAACCACCATCGA
GCAAGCGATAGAAGCGTGTGACGGTAACATTCCACAAGCAGCGAAACACTTGGACGTGAGTCCCTCGACAATCTACCGCA
AAATACAGGCATGGAATGCAAGCGAGAAGAAAGCATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

83.111

96.774

0.804
  pilR Pseudomonas aeruginosa PAK

38.739

95.484

0.37

Multiple sequence alignment