Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   CO687_RS04980 Genome accession   NZ_CP023511
Coordinates   1005389..1005847 (+) Length   152 a.a.
NCBI ID   WP_061594154.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1000389..1010847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS04955 (CO687_04955) glmS 1000488..1002299 (+) 1812 WP_061594151.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  CO687_RS04960 (CO687_04960) - 1002415..1002939 (+) 525 WP_061596801.1 hypothetical protein -
  CO687_RS04965 (CO687_04965) scrK 1003180..1004079 (+) 900 WP_045773521.1 fructokinase ScrK -
  CO687_RS04970 (CO687_04970) - 1004128..1004538 (+) 411 WP_061596784.1 peptide deformylase -
  CO687_RS04975 (CO687_04975) - 1004548..1005117 (+) 570 WP_061596786.1 hypothetical protein -
  CO687_RS04980 (CO687_04980) rcrR 1005389..1005847 (+) 459 WP_061594154.1 MarR family transcriptional regulator Regulator
  CO687_RS04985 (CO687_04985) rcrP 1005840..1007606 (+) 1767 WP_061594155.1 ABC transporter ATP-binding protein Regulator
  CO687_RS04990 (CO687_04990) rcrQ 1007596..1009353 (+) 1758 WP_061594156.1 ABC transporter ATP-binding protein Regulator
  CO687_RS04995 (CO687_04995) manA 1009513..1010457 (+) 945 WP_012130786.1 mannose-6-phosphate isomerase, class I -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17557.31 Da        Isoelectric Point: 7.9553

>NTDB_id=207830 CO687_RS04980 WP_061594154.1 1005389..1005847(+) (rcrR) [Streptococcus gordonii strain FDAARGOS_371]
MEKPLLEFKRFGRKTQRIIEKRAKVCGMEFMGGPQGQVLHIVSHRAKRGLSTFIRDIEHELDISKSVASNLIKRMEKNGS
IFLEVSETDKRAKMIHLTAQSKQQLKELHDFFNEIDRCLLQGVSEEELATFTLVMAKFHQNIEKLESEDADV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=207830 CO687_RS04980 WP_061594154.1 1005389..1005847(+) (rcrR) [Streptococcus gordonii strain FDAARGOS_371]
TTGGAAAAGCCTTTATTAGAATTCAAACGCTTTGGCAGAAAAACTCAACGGATCATTGAGAAACGCGCCAAGGTTTGTGG
GATGGAATTTATGGGAGGTCCACAAGGTCAAGTTCTTCACATCGTATCTCACCGAGCGAAGAGAGGACTTTCGACCTTTA
TTAGGGATATCGAGCATGAGTTAGATATTTCTAAGTCGGTGGCCAGCAATCTAATCAAACGGATGGAAAAAAATGGATCT
ATCTTTCTTGAGGTAAGCGAGACAGATAAAAGGGCCAAGATGATTCATTTAACAGCCCAGTCTAAACAACAATTGAAAGA
GTTACATGATTTTTTTAATGAAATCGATCGCTGTCTCCTCCAGGGTGTTTCAGAAGAAGAATTGGCAACCTTCACTCTGG
TTATGGCGAAATTTCACCAAAATATTGAGAAATTAGAAAGCGAGGATGCCGATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

40.411

96.053

0.388

Multiple sequence alignment