Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   BSR56_RS12780 Genome accession   NZ_CP018260
Coordinates   2620385..2621185 (-) Length   266 a.a.
NCBI ID   WP_026056343.1    Uniprot ID   A0AAW4JFL0
Organism   Acinetobacter haemolyticus strain XH900     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2615385..2626185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR56_RS12760 (BSR56_12870) - 2616451..2617149 (-) 699 WP_004640812.1 YfgM family protein -
  BSR56_RS12765 (BSR56_12875) hisS 2617174..2618466 (-) 1293 WP_004640814.1 histidine--tRNA ligase -
  BSR56_RS12770 (BSR56_12880) ispG 2618463..2619578 (-) 1116 WP_005083384.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  BSR56_RS12775 (BSR56_12885) - 2619600..2620394 (-) 795 WP_100834023.1 helix-turn-helix domain-containing protein -
  BSR56_RS12780 (BSR56_12890) pilF 2620385..2621185 (-) 801 WP_026056343.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  BSR56_RS12785 (BSR56_12895) rlmN 2621203..2622438 (-) 1236 WP_100834024.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  BSR56_RS12790 (BSR56_12900) ndk 2622559..2622990 (-) 432 WP_004640823.1 nucleoside-diphosphate kinase -
  BSR56_RS12795 (BSR56_12905) iscX 2623100..2623300 (-) 201 WP_004640824.1 Fe-S cluster assembly protein IscX -
  BSR56_RS12800 (BSR56_12910) - 2623383..2623934 (-) 552 WP_004640826.1 phosphatase PAP2 family protein -
  BSR56_RS12805 (BSR56_12915) - 2623958..2625274 (-) 1317 WP_228153384.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30220.21 Da        Isoelectric Point: 9.6050

>NTDB_id=207831 BSR56_RS12780 WP_026056343.1 2620385..2621185(-) (pilF) [Acinetobacter haemolyticus strain XH900]
MNTTRLKTTIAITVVLMAGGLTACQSTPSTKDPEKAVQVRTQLAAEYIRTRDLDSAKRSLDQALKLNSRDANANMMMGIL
LQQEGSKLNMEKADAYFKRAISSEPDNAQARNNYGTYLYQMQRYNEAIEQFTRAGATLGYDQRFQSLENLGRIYLLLGDV
TNAEKSFKQALQANRNATISMLELSEIFYLQQNNRDASQLYEQYVRSVGQRNQGARALWIGIRIARANADQLGMQVLVNQ
LRALFPDSPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=207831 BSR56_RS12780 WP_026056343.1 2620385..2621185(-) (pilF) [Acinetobacter haemolyticus strain XH900]
TTGAATACAACTCGACTAAAAACGACCATAGCGATAACAGTTGTACTTATGGCAGGTGGCTTGACAGCTTGCCAATCGAC
ACCATCTACGAAAGATCCAGAGAAAGCTGTTCAGGTTCGCACCCAATTGGCTGCGGAATATATTCGTACGCGTGATTTGG
ACTCTGCAAAACGTTCACTTGACCAAGCATTGAAACTTAATTCCCGTGATGCAAATGCCAATATGATGATGGGTATTTTG
CTGCAACAAGAGGGAAGTAAGCTCAATATGGAAAAAGCAGATGCTTATTTTAAGCGAGCGATTTCATCTGAGCCAGACAA
TGCTCAAGCGCGTAATAATTACGGTACATACTTATATCAGATGCAGCGTTATAATGAAGCAATTGAGCAGTTCACGCGTG
CTGGTGCAACCTTAGGTTATGATCAACGATTTCAATCACTGGAAAACCTAGGGCGAATCTATTTATTATTGGGCGATGTG
ACGAATGCTGAAAAATCATTCAAACAGGCGCTGCAAGCAAATCGAAATGCAACCATTTCAATGTTAGAGTTGTCGGAAAT
TTTCTATTTGCAACAAAACAATAGAGATGCATCCCAGTTATATGAACAATATGTTCGTAGCGTGGGACAGCGCAACCAAG
GTGCTAGAGCACTTTGGATCGGGATACGCATTGCTCGAGCGAATGCGGATCAGTTAGGAATGCAAGTGTTAGTCAACCAA
TTACGCGCTTTATTTCCTGATAGTCCAGAATATCAACGTTATTTGCAATTACAGTACAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_12)

(108-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

76.58

100

0.774
  pilF Acinetobacter baylyi ADP1

68.045

100

0.68

Multiple sequence alignment