Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BSR56_RS02170 Genome accession   NZ_CP018260
Coordinates   436900..437559 (-) Length   219 a.a.
NCBI ID   WP_100833174.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain XH900     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 431900..442559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR56_RS02135 (BSR56_02150) - 432531..433193 (+) 663 WP_004641119.1 outer membrane lipid asymmetry maintenance protein MlaD -
  BSR56_RS02140 (BSR56_02155) - 433213..433845 (+) 633 WP_004641117.1 phospholipid-binding protein MlaC -
  BSR56_RS02145 (BSR56_02160) - 433857..434144 (+) 288 WP_005088352.1 lipid asymmetry maintenance protein MlaB -
  BSR56_RS02150 (BSR56_02165) - 434195..434737 (-) 543 WP_005088350.1 hypothetical protein -
  BSR56_RS02155 (BSR56_02170) - 434739..435755 (-) 1017 WP_005086867.1 CorA family divalent cation transporter -
  BSR56_RS02160 (BSR56_02175) - 435929..436513 (+) 585 WP_005088343.1 TIGR00730 family Rossman fold protein -
  BSR56_RS02165 (BSR56_02180) - 436524..436931 (+) 408 WP_020846335.1 NUDIX hydrolase -
  BSR56_RS02170 (BSR56_02185) comF 436900..437559 (-) 660 WP_100833174.1 ComF family protein Machinery gene
  BSR56_RS02175 (BSR56_02190) recG 437552..439597 (-) 2046 WP_100833175.1 ATP-dependent DNA helicase RecG -
  BSR56_RS02180 (BSR56_02195) - 439616..440443 (+) 828 WP_100833176.1 NAD-dependent epimerase/dehydratase family protein -
  BSR56_RS02185 (BSR56_02200) - 440587..441567 (+) 981 WP_005086855.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25117.28 Da        Isoelectric Point: 9.6664

>NTDB_id=207817 BSR56_RS02170 WP_100833174.1 436900..437559(-) (comF) [Acinetobacter haemolyticus strain XH900]
MFKLLGSQTQRFLDHFTACDLCEIGAKQYFGVCKNCWDDMPWLKQTIERNQQQVFVVCHYQYPINRIIQQFKYEQKLHHQ
RVLSGILQQVRLPKVQAIVPMPISTDRLVERGFNQSLLLAQGLAQTLNIPVWQPVRRLAQHSQKGLSRLERLENIEHQFI
AHPPNKIRYRKVLIVDDVITTGSSIDALSKSLRQLGCQQIYAVCLAAGGVKDSILPSVA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=207817 BSR56_RS02170 WP_100833174.1 436900..437559(-) (comF) [Acinetobacter haemolyticus strain XH900]
ATGTTTAAGTTACTTGGCAGTCAAACCCAACGATTCTTAGATCATTTCACTGCATGTGATTTATGTGAAATAGGAGCCAA
ACAATACTTTGGCGTATGCAAAAATTGTTGGGATGATATGCCTTGGTTAAAACAAACAATTGAACGCAATCAACAGCAGG
TCTTCGTTGTCTGCCATTATCAATATCCCATCAACCGAATTATTCAACAATTTAAATATGAGCAGAAGCTACATCACCAG
CGAGTGCTCAGTGGCATATTACAACAAGTTAGACTTCCCAAAGTTCAAGCGATTGTTCCCATGCCCATTTCAACCGATCG
ATTAGTCGAACGAGGCTTTAATCAATCTTTATTATTGGCTCAAGGCTTAGCACAAACGCTCAATATTCCAGTTTGGCAAC
CTGTTCGACGTTTAGCCCAACACTCTCAAAAAGGCTTATCCCGCCTAGAACGTCTGGAGAATATCGAGCATCAGTTTATT
GCTCATCCACCGAATAAAATCCGTTATCGCAAAGTCTTAATTGTTGATGATGTCATCACTACTGGCAGCTCGATTGATGC
ATTATCCAAAAGCTTACGCCAATTGGGCTGCCAACAGATCTATGCTGTTTGTCTTGCTGCTGGTGGGGTTAAGGACTCAA
TCCTGCCATCTGTTGCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(116-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

65.55

95.434

0.626
  comF Acinetobacter baumannii D1279779

65.072

95.434

0.621

Multiple sequence alignment