Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   BSR55_RS02210 Genome accession   NZ_CP018259
Coordinates   484917..485558 (-) Length   213 a.a.
NCBI ID   WP_100884434.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain XH901     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 479917..490558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR55_RS02175 (BSR55_02160) mlaE 480046..480825 (+) 780 WP_004725633.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  BSR55_RS02180 (BSR55_02165) - 480825..481502 (+) 678 WP_004825227.1 outer membrane lipid asymmetry maintenance protein MlaD -
  BSR55_RS02185 (BSR55_02170) - 481523..482146 (+) 624 WP_004825224.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  BSR55_RS02190 (BSR55_02175) - 482181..482468 (+) 288 WP_004825222.1 hypothetical protein -
  BSR55_RS02195 (BSR55_02180) - 482588..483601 (-) 1014 WP_004825220.1 magnesium and cobalt transport protein CorA -
  BSR55_RS02200 (BSR55_02185) - 483760..484356 (+) 597 WP_100884432.1 TIGR00730 family Rossman fold protein -
  BSR55_RS02205 (BSR55_02190) - 484477..484866 (+) 390 WP_171266146.1 NUDIX hydrolase -
  BSR55_RS02210 (BSR55_02195) comF 484917..485558 (-) 642 WP_100884434.1 ComF family protein Machinery gene
  BSR55_RS02215 (BSR55_02200) recG 485734..487779 (-) 2046 WP_100884435.1 ATP-dependent DNA helicase RecG -
  BSR55_RS02220 (BSR55_02205) - 487826..488602 (+) 777 WP_100884436.1 NAD(P)H-binding protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24829.97 Da        Isoelectric Point: 9.4468

>NTDB_id=207782 BSR55_RS02210 WP_100884434.1 484917..485558(-) (comF) [Acinetobacter bereziniae strain XH901]
MLQFIHQLLHKGIQCISPCLLCGIDQQQAHSLCQDCWNQLPWYKQSIERHEQQILCAHHYDFPIDRIIQTYKYEQQLQYQ
NVLAHSLLNLRFSRVQAIVPMPISTERLKERGYNQMLIVAKIMAKQLKIPVWQPVVRQAQHSQKGLSRVERLENIEHQFR
TIQSEKRKYKKVLIVDDVVTTGSSIHALTQALQRLGCQQISSLCIAAAHPSMK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=207782 BSR55_RS02210 WP_100884434.1 484917..485558(-) (comF) [Acinetobacter bereziniae strain XH901]
ATGCTCCAATTTATCCATCAACTGCTCCATAAAGGCATTCAATGTATTTCTCCATGCTTACTGTGCGGCATTGACCAACA
ACAAGCTCACTCCTTATGTCAAGACTGTTGGAATCAACTCCCTTGGTACAAACAATCCATAGAGCGACATGAACAACAAA
TACTTTGCGCACATCACTATGATTTCCCAATTGATCGCATCATTCAAACGTATAAATATGAGCAACAATTACAATATCAA
AACGTGCTTGCACATAGTTTATTGAACTTAAGATTTTCCAGAGTTCAAGCGATTGTTCCTATGCCCATTTCAACCGAGCG
CCTTAAAGAACGGGGTTATAACCAAATGTTGATTGTGGCTAAAATTATGGCAAAACAATTAAAAATTCCTGTTTGGCAAC
CCGTGGTTCGACAAGCTCAACATTCACAAAAAGGCTTAAGTCGAGTTGAACGACTGGAAAACATTGAGCATCAATTTCGA
ACCATTCAATCCGAAAAGAGAAAATATAAAAAAGTATTGATTGTGGATGATGTGGTCACAACGGGAAGTTCAATTCATGC
CCTCACCCAAGCTTTACAACGTTTGGGCTGTCAGCAGATTTCTAGTCTTTGTATTGCAGCAGCACATCCATCTATGAAAT
GA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.804

93.427

0.568
  comF Acinetobacter baumannii D1279779

60.302

93.427

0.563

Multiple sequence alignment