Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   BSR55_RS01895 Genome accession   NZ_CP018259
Coordinates   426088..428313 (-) Length   741 a.a.
NCBI ID   WP_100884412.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain XH901     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 421088..433313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR55_RS01875 (BSR55_01865) - 423334..423666 (+) 333 WP_100884408.1 hypothetical protein -
  BSR55_RS01880 (BSR55_01870) - 423707..424060 (+) 354 WP_100884409.1 hypothetical protein -
  BSR55_RS01885 (BSR55_01875) - 425022..425393 (+) 372 WP_100884410.1 hypothetical protein -
  BSR55_RS01890 (BSR55_01880) - 425553..425951 (+) 399 WP_100884411.1 hypothetical protein -
  BSR55_RS01895 (BSR55_01885) priA 426088..428313 (-) 2226 WP_100884412.1 primosomal protein N' Machinery gene
  BSR55_RS01900 (BSR55_01890) gspF 428482..429687 (+) 1206 WP_005034243.1 type II secretion system inner membrane protein GspF -
  BSR55_RS01905 (BSR55_01895) gspG 429723..430160 (+) 438 WP_004825310.1 type II secretion system major pseudopilin GspG -
  BSR55_RS01910 (BSR55_01900) - 430442..430777 (+) 336 WP_005034242.1 hypothetical protein -
  BSR55_RS01915 (BSR55_01905) - 430863..431120 (-) 258 WP_100884413.1 DUF2798 domain-containing protein -
  BSR55_RS01925 (BSR55_01915) - 431817..432155 (+) 339 WP_100884414.1 tRNA-binding protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84218.58 Da        Isoelectric Point: 8.9468

>NTDB_id=207781 BSR55_RS01895 WP_100884412.1 426088..428313(-) (priA) [Acinetobacter bereziniae strain XH901]
MPNTIVTPQTIYRVQVAVPVYLNDCFDYQVSAEQYAQAEIGARVAVSFGRQNLVGVIVKKIPIDEPIDSHFKLKAITELL
DNHAILDSKVLNLLTWSSQYYQFPIGEVIQTALPTLLRQGKPYDLLARVWKVIDLNAEDKVKRSEKQQDAYKILKLHPKG
TQENILNLSGIETATLKVLEKKAIIQFALEPQNTQPEPVQLAQLPLTPNEDQKKAIQTILKALKKYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCNIALLHSGLNDSKRLQAWQHAQTGKASIILGTRSAIYTPL
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIESYYLARQEKLTRIELNQRAGVALMPKMHL
IDLKVAKKQHGLSDVLIEEIKKRLDKKEQVLIFLNRRGYAPVLICESCGWQANCPNCDAHFTLHLKPYQHLHCHHCGTIN
RLPDACPQCNQQQLKPIGMGTAKVEETLTELFPNFPVLRVDRDSTSRVGSWQKIYDQIQKSEPTILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSVDFRATERTAQLIIQVAGRAGRGENKGEVYLQTLRPDHPLLNTLIHNDYRTFAKQTLKDRQAALL
PPFRYASLIRCESKHQEENLKFLTEMTQLLRQMSEPHLIDIWGPIPAPMERKAGRYQAHVVLLSQDRAKMHFYVHQWWAQ
LLQQKPSTMKVTIDVDPQELS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=207781 BSR55_RS01895 WP_100884412.1 426088..428313(-) (priA) [Acinetobacter bereziniae strain XH901]
ATGCCGAATACCATTGTTACACCACAAACTATTTATCGTGTTCAAGTTGCTGTTCCAGTGTATTTGAATGACTGTTTTGA
CTATCAAGTGAGTGCTGAACAGTACGCACAGGCAGAAATCGGTGCACGTGTTGCTGTGTCTTTCGGACGACAAAACCTTG
TTGGGGTGATTGTAAAAAAAATTCCGATTGATGAACCTATAGACTCTCATTTTAAACTCAAGGCAATTACTGAACTATTA
GATAATCACGCTATTCTAGACAGTAAAGTTTTAAATTTATTGACATGGTCATCGCAATATTACCAATTCCCAATTGGTGA
GGTGATTCAAACTGCCCTTCCTACATTACTCCGCCAAGGTAAACCTTATGATTTATTGGCTCGTGTCTGGAAAGTAATCG
ATTTAAATGCTGAAGACAAAGTAAAGCGTTCTGAAAAACAACAAGATGCTTATAAAATTCTAAAATTACATCCAAAAGGA
ACGCAGGAAAATATCCTAAACCTGAGTGGTATTGAAACAGCAACACTAAAAGTGCTTGAGAAAAAAGCAATTATCCAATT
TGCACTTGAACCTCAAAATACTCAACCTGAACCAGTTCAACTGGCTCAGTTGCCACTCACTCCCAATGAAGATCAAAAGA
AAGCCATCCAAACGATTTTAAAGGCACTAAAGAAATATCAAGCATTTTTGTTAGATGGTTTAACGGGAAGTGGTAAAACT
GAGGTTTATTTACAAGTGATGCACGAAGTACTGAAACAAGGCAAACAAGTGCTTGTTTTAGTCCCAGAAATTGGCTTAAC
ACCACAAACCATCAGCCGTTTTCAGTCACGCTTTCATTGCAATATTGCATTGCTTCACTCTGGTTTAAATGACAGCAAAC
GTTTACAAGCATGGCAACATGCACAAACCGGTAAAGCCTCTATTATTTTAGGGACTCGCTCTGCAATTTATACACCTTTA
CCTAATCTCGGTTTAATTATTCTGGATGAAGAGCATGATCTTTCATTTAAACAACAAGAAGGTTTCCGTTATCATGCCCG
TGATGTTGCTTTATACCGTGCGCATTTAGAAAATTGTCCAATTATCTTAGGTTCTGCCACACCAAGTATTGAAAGCTATT
ATTTGGCTCGTCAAGAAAAGCTGACACGTATTGAATTAAATCAACGTGCAGGCGTCGCGTTGATGCCGAAAATGCATTTG
ATTGATTTAAAAGTTGCTAAGAAGCAACATGGCTTAAGTGATGTTTTAATCGAGGAAATTAAAAAGCGTCTAGATAAAAA
AGAACAGGTCTTAATTTTTTTAAATCGTCGCGGTTATGCACCTGTATTAATTTGTGAAAGTTGTGGATGGCAAGCCAACT
GCCCAAATTGTGATGCACACTTTACCTTACACTTAAAACCTTATCAGCATTTACACTGTCATCATTGTGGGACGATTAAT
CGTTTGCCTGATGCCTGCCCACAATGCAATCAACAACAATTAAAACCAATCGGCATGGGAACTGCAAAGGTTGAAGAAAC
CTTAACTGAATTATTCCCCAACTTTCCTGTACTTCGCGTCGATCGGGATTCAACTAGCCGTGTCGGCAGTTGGCAGAAAA
TCTATGATCAGATTCAAAAAAGTGAACCCACGATTTTGCTTGGGACTCAAATGCTCGCCAAAGGGCATCATTTCCCATAT
GTCACTTTGGTTGCAATCTTAGATATAGATGCAGGTTTACTCAGTGTCGACTTTCGAGCAACAGAGCGTACAGCCCAATT
GATTATTCAAGTTGCAGGTCGGGCAGGTCGTGGAGAGAATAAAGGAGAAGTCTATTTGCAAACACTTCGACCTGATCATC
CTTTATTAAATACTTTGATTCACAATGACTATCGAACCTTTGCCAAGCAAACCTTAAAAGATCGTCAAGCCGCTTTGCTT
CCCCCTTTTCGCTATGCCAGTTTGATACGCTGTGAATCTAAACATCAGGAAGAAAATCTAAAGTTTTTGACTGAAATGAC
GCAATTACTTCGTCAAATGTCGGAACCACACTTAATTGATATTTGGGGTCCTATTCCAGCCCCAATGGAGCGTAAAGCAG
GTCGTTACCAAGCACATGTGGTATTGCTTTCACAAGATCGAGCAAAAATGCACTTTTATGTCCATCAATGGTGGGCCCAA
TTACTACAGCAAAAACCCTCTACAATGAAAGTAACGATTGATGTTGATCCACAAGAGTTAAGTTGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(532-598)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(207-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

72.065

100

0.721

Multiple sequence alignment