Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   CO686_RS04535 Genome accession   NZ_CP023507
Coordinates   907518..910793 (-) Length   1091 a.a.
NCBI ID   WP_096753574.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_367     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 902518..915793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO686_RS04525 (CO686_04525) - 902672..903850 (-) 1179 WP_096753572.1 hypothetical protein -
  CO686_RS04530 (CO686_04530) rexA 903868..907521 (-) 3654 WP_096753573.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  CO686_RS04535 (CO686_04535) rexB 907518..910793 (-) 3276 WP_096753574.1 ATP-dependent nuclease subunit B Machinery gene
  CO686_RS04540 (CO686_04540) - 910900..911319 (-) 420 WP_001138495.1 EVE domain-containing protein -
  CO686_RS04545 (CO686_04545) - 911312..911773 (-) 462 WP_000049664.1 MarR family transcriptional regulator -
  CO686_RS04550 (CO686_04550) - 911920..912729 (+) 810 WP_000593599.1 Cof-type HAD-IIB family hydrolase -
  CO686_RS04555 (CO686_04555) - 912775..913512 (-) 738 WP_000759213.1 TraX family protein -
  CO686_RS04560 (CO686_04560) aguB 913657..914532 (-) 876 WP_001246741.1 N-carbamoylputrescine amidase -
  CO686_RS04565 (CO686_04565) aguA 914542..915627 (-) 1086 WP_000573466.1 agmatine deiminase -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124457.10 Da        Isoelectric Point: 5.7214

>NTDB_id=207708 CO686_RS04535 WP_096753574.1 907518..910793(-) (rexB) [Streptococcus oralis strain FDAARGOS_367]
MKLLYTDIRTSLTEILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFAITVTRFAQMARYLVLNDLPAKTS
LDDIGLGMAFYKCLAELDPKVLRVYGAIKQDPQFIQQLIELYHEMTTAQMSFLDLESLTDEDKRADLLLIFEQVTAYLNQ
GQLAQGSQLSHLIEAIENDKVSSDFSQIALVIDGFTRFSAEEERVVDLLHRKGAEIVIGAYASKKAYSSPFTEGNLYQAS
VEFLQHLGAKYQTPAQDRSQTHEKMDSFDKASRLLESSYDFSELALDVDEKDSENLQIWSCLTQKEELELVARAIRQKLH
DHPELSYKNFRILLGDVASYQLSLKTIFDQYQIPFYLGRSESMAHHPLTQYVESILRLKRYRFRQEDLINLLRTGLYTDL
SQADIDAFEQYIRYLGINGLPAFQQNFTNSHHGKFDLERLNALRLRVLAPLETLFASRKQKAENLLQKWNTFLKNAALSK
QMQELTATMETLEQERQAEVWKAFCHVLEQFATVFSGSQVSLEDFLSLLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDYLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKNRYTMLSLVNAARKQLVLSAPSLLNENE
SKESAYLQELVHFGFSRIEKKIHHKGLSKDDMGSYHSLLSSLVAYHQQATSSENEQDVTFVKVLARVMGKKLDQKGLANP
ALPTSPSSKPLEKETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERALKLPA
ENSFDQRLEQAIKETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIQEEATFGGKDQAFIQLDNGRSV
HVRGKVDRIDRLKADGALGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKREGEQNFFGAMYLEMTEPVQSLLAVKSLA
GAVAEVSKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILEGQFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQARFLEKLELSDGKRLVGEKLKQAWFEKIREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=207708 CO686_RS04535 WP_096753574.1 907518..910793(-) (rexB) [Streptococcus oralis strain FDAARGOS_367]
ATGAAATTACTTTATACTGATATTCGGACTTCTTTGACTGAAATTTTAACGAGAGAGGCAGAAGAGCTAGTTGCTGCAGG
CAAGCGGGTTTTCTACATCGCCCCCAACTCTCTTTCATTTGAAAAGGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTGCGATTACCGTCACGCGCTTTGCTCAAATGGCTCGTTACCTAGTTTTAAATGATTTGCCTGCCAAGACCAGT
CTAGATGATATCGGCCTTGGGATGGCCTTTTATAAATGCCTTGCAGAACTGGATCCCAAAGTCTTACGTGTGTATGGTGC
AATTAAGCAGGATCCTCAATTTATCCAGCAGTTGATTGAACTTTATCATGAGATGACGACTGCTCAGATGAGCTTTTTGG
ACTTGGAAAGTTTGACGGATGAGGATAAACGAGCAGATTTACTCTTGATTTTTGAGCAAGTGACTGCCTATCTCAATCAA
GGTCAGTTGGCTCAGGGAAGTCAGTTGTCCCATTTGATTGAGGCTATTGAGAATGACAAGGTAAGCAGTGATTTCAGTCA
GATTGCCTTGGTTATTGATGGATTTACCCGTTTTTCTGCCGAGGAAGAGCGTGTAGTGGATCTGCTCCATCGAAAAGGTG
CCGAGATTGTTATTGGGGCTTATGCAAGCAAGAAGGCTTATAGCAGTCCGTTCACTGAAGGGAATCTCTACCAAGCCAGT
GTGGAATTTCTTCAACATTTGGGGGCAAAATACCAAACACCTGCTCAGGATCGTTCTCAGACACATGAGAAAATGGATAG
TTTTGACAAGGCCTCTCGTTTGCTGGAGTCTTCTTATGATTTTTCAGAACTTGCTTTAGATGTAGATGAGAAGGACAGTG
AAAACCTGCAAATCTGGTCTTGTTTGACGCAAAAAGAGGAGTTGGAGCTGGTGGCTCGCGCTATTCGTCAGAAATTACAT
GACCATCCAGAACTGAGTTACAAGAATTTTCGCATTCTCTTAGGGGATGTGGCTTCTTACCAGTTATCACTGAAAACCAT
TTTTGACCAGTATCAGATTCCTTTCTATCTTGGTAGAAGTGAATCCATGGCTCATCATCCTTTGACTCAGTATGTGGAGT
CTATTTTACGTTTGAAACGCTACCGTTTTCGTCAGGAGGATTTGATTAATCTCCTCAGAACTGGTCTGTATACCGACCTT
AGCCAAGCGGATATTGATGCTTTTGAGCAATATATCCGCTATCTTGGCATCAATGGCTTGCCAGCTTTTCAGCAGAACTT
CACAAATTCCCATCATGGAAAATTTGATTTAGAACGCTTGAATGCCCTTCGTCTGCGCGTTTTGGCGCCACTTGAAACCT
TATTTGCCAGTCGAAAACAAAAGGCTGAAAATCTCTTGCAAAAGTGGAATACTTTTCTAAAAAATGCTGCTTTAAGCAAG
CAGATGCAAGAATTGACAGCTACTATGGAAACACTAGAACAGGAAAGACAAGCCGAAGTTTGGAAAGCCTTCTGCCATGT
TTTAGAACAATTTGCGACCGTTTTTTCCGGTTCACAAGTTAGTCTAGAGGACTTCCTGTCCTTGCTTCATTCTGGGATGA
GTTTGTCCCAGTATCGCACCATTCCAGCAACTGTTGATACTGTTCTGGTGCAGAGTTACGATCTGATTGCCCCTCTGACC
GCTGACTTTGTCTACGCCATTGGGCTGACTCAGGATTATTTACCCAAAATTGCGCAAAACACCAGTCTGTTAACAGACGA
AGAAAGACAAAGCCTAAACCAAGCGACTGAAGAGGGAGCGCAATTACTGATTGCAAGTAGTGAAAATCTCAAGAAAAATC
GCTATACTATGCTTTCCTTAGTTAATGCTGCCCGCAAGCAGTTGGTGTTATCAGCTCCAAGTCTTCTCAATGAAAATGAG
AGTAAGGAATCGGCCTATCTTCAAGAGCTAGTCCATTTTGGATTTAGCCGGATAGAGAAGAAGATTCATCACAAAGGTCT
GTCTAAGGATGATATGGGTTCTTATCACAGTCTCTTGTCTAGTCTAGTTGCCTATCATCAACAAGCTACTTCTAGTGAAA
ATGAGCAAGATGTCACCTTTGTCAAGGTTCTGGCGCGTGTGATGGGTAAAAAACTTGATCAAAAAGGTCTTGCAAATCCT
GCTCTCCCAACCAGTCCAAGCAGCAAACCATTAGAGAAAGAGACCTTGCAGGCTCTCTATCCAGCTGACAAGGAGTTTTA
CCTGTCTACGTCTGGTTTGACAGAGTTTTACCGCAATGAATACAGTTATTTCCTCCGTTATGTCTTAGGTTTGCAGGAAG
AATTGCGCCTGCGTCCAGATGCTCGCAGTCACGGGAATTTCTTGCACCGTATTTTTGAACGTGCCTTGAAACTACCTGCT
GAAAATTCCTTTGATCAGCGTTTGGAGCAAGCTATCAAGGAAACCAGCCAAGAACGCGAATTTGAAGCTATTTATCAGGA
AAGTTTGGAAGCCCAGTTTACCAAGGAAGTTCTACTTGATGTCGCGCGAACTACGGGCCACATCCTTCGTCATAATCCAG
CTATCGAAACCATTCAAGAGGAGGCAACATTTGGTGGTAAAGATCAAGCCTTTATTCAATTGGATAATGGTCGCAGTGTC
CATGTGCGAGGCAAGGTTGACCGTATTGACCGCCTGAAAGCTGATGGAGCGCTAGGAGTGGTGGACTATAAGTCTAGTTT
GACCCAATTCCAGTTTCCTCATTTCTTTAATGGGCTTAATTCCCAACTGCCTACCTATCTTGCTGCCCTAAAAAGAGAAG
GGGAGCAGAACTTTTTCGGTGCCATGTACTTGGAAATGACTGAGCCTGTCCAATCTTTATTAGCTGTTAAAAGTCTGGCA
GGAGCAGTAGCAGAAGTCAGCAAGTCTATGAAATACCAGGGACTCTTTTTAGAGAAAGAAAGCAGTCACTTGGGAGAGTT
TTATAACAAAAACAAGGCCAATCAGCTGACAGACGAGGAATTCCAGCTCCTACTAGACTATAATGCCCATCTGTACAAGA
AGGCAGCTGAGAAGATTTTAGAAGGCCAGTTTGCCATCAATCCATATACAGAAAACGGCAGAAGTATTGCTCCATACGTC
CAGCAACACCAAGCCATCACAGGTTTTGAAGCAAATTACCACTTGGGACAAGCCCGTTTCCTTGAGAAATTAGAGTTGTC
TGACGGCAAACGTCTGGTCGGAGAAAAACTCAAGCAAGCTTGGTTTGAAAAAATAAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

90.376

100

0.904

Multiple sequence alignment