Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   CO686_RS04530 Genome accession   NZ_CP023507
Coordinates   903868..907521 (-) Length   1217 a.a.
NCBI ID   WP_096753573.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_367     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 898868..912521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO686_RS04505 (CO686_04505) - 900250..901029 (-) 780 WP_000207523.1 ribonuclease HII -
  CO686_RS04510 (CO686_04510) ylqF 901016..901867 (-) 852 WP_000201310.1 ribosome biogenesis GTPase YlqF -
  CO686_RS04515 (CO686_04515) - 902083..902298 (+) 216 WP_001098939.1 AbrB family transcriptional regulator -
  CO686_RS04520 (CO686_04520) - 902282..902638 (+) 357 WP_000560803.1 type II toxin-antitoxin system PemK/MazF family toxin -
  CO686_RS04525 (CO686_04525) - 902672..903850 (-) 1179 WP_096753572.1 hypothetical protein -
  CO686_RS04530 (CO686_04530) rexA 903868..907521 (-) 3654 WP_096753573.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  CO686_RS04535 (CO686_04535) rexB 907518..910793 (-) 3276 WP_096753574.1 ATP-dependent nuclease subunit B Machinery gene
  CO686_RS04540 (CO686_04540) - 910900..911319 (-) 420 WP_001138495.1 EVE domain-containing protein -
  CO686_RS04545 (CO686_04545) - 911312..911773 (-) 462 WP_000049664.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 140261.65 Da        Isoelectric Point: 5.0999

>NTDB_id=207707 CO686_RS04530 WP_096753573.1 903868..907521(-) (rexA) [Streptococcus oralis strain FDAARGOS_367]
MKPISFLTEEEIQKLQKAEASSSKEQKKTAEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFT
VKAATELKERLEKKISQQIQETDDVDLKQHLGRQLADLPNAAIGTMDSFTQKFLGKHGYLIDIAPNFRILQNESEQLLLK
NEVFHQVFEEHYQGENKEKFSRLVKNFAGRGKDERGLRQQVYKIYDFLQSTSSPQKWLNESFLKGFEEADFANEKDKLTE
QIKQALWDLESFFRYHLDNDAKEFPKAAYLENVQLVLDEISSLNQESDSQAYQAVLTRVVVISKEKNGRALANSSRKADL
KPLVDAYNEERKAQFAKLGQLADQITILDYQEHYHEDTWDLAKTFQNFMSDFVNAYRERKRQENAFEFADISHYTIEVLE
NFPQVREAYQERFHEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQNPQEGKLIL
LKENFRSSSEVLSATNDVFARLMDQEVGEINYDSMHQLVFANTKLTPNPENKAEFLLYDKDDSGQEEEESQAETKLTGEM
RLVIKEILKLHQEKGVAFKEIALLTSSRSRNDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALV
ALMKSPMFGFDEDELARLSLQKAEDKVQENLFEKLINAQKQAARQKELIHTALAEKLNQFMDILDSWRLYAKTHSLYDLI
WKIYNDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHK
SKGLEFPYVFILNMDQDFNKQDSTSDVILSRQNGLGVKYIAKVETGAVEAHYPKTIKLSIPSLTYTQNEKELQLASYSEQ
MRLLYVAMTRAEKKLYLVGKGSREKLEAKEYPSAESGKLDSNTRLQARNFQDWVWAISKVFTKDNLNFSYRFVGEDLLTR
EAIGQLENKSPLQDSSQADNRQSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVEITNQTQSS
EKKISFDLPDFSTKEKVTGAEIGSATHELMQRIDLIQQPTLASLTETLKQVQTSPAVRDKINLSKILAFFDTALGQEILA
NTSHLYREQPFSMLKKDQKSKEDFVVRGILDGYLLYEDRIVLFDYKTDRYDEPSQLIDRYRGQLALYGEALSRAYSIENI
EKYLILLGKDEVQVVKV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=207707 CO686_RS04530 WP_096753573.1 903868..907521(-) (rexA) [Streptococcus oralis strain FDAARGOS_367]
ATGAAGCCCATTTCCTTTTTAACTGAGGAAGAAATTCAAAAACTGCAAAAAGCAGAAGCAAGTTCGAGCAAGGAACAGAA
GAAAACAGCCGAGCAAATCGAAGCCATTTATACCGCAGGGCAAAATATCCTTGTTTCAGCGTCTGCTGGTTCAGGGAAGA
CCTTTGTCATGGCAGAGCGTATTCTGGATCAGTTAGCACGTGGTGTGGAAATCAGCCAACTCTTTATCTCGACCTTTACC
GTCAAGGCTGCTACAGAACTCAAGGAACGTTTGGAGAAAAAAATCAGCCAACAAATACAAGAAACCGATGATGTCGATCT
CAAACAACACTTGGGACGCCAGTTGGCAGATCTACCAAACGCTGCCATCGGAACCATGGACTCCTTCACGCAAAAATTCC
TTGGCAAACATGGCTATCTGATTGATATCGCACCGAACTTCCGTATTTTGCAAAATGAAAGTGAACAGTTACTCTTAAAG
AACGAAGTTTTTCATCAGGTTTTTGAAGAGCATTACCAAGGTGAAAATAAAGAGAAATTTAGTCGATTAGTGAAAAACTT
TGCTGGACGTGGCAAGGATGAACGAGGTCTGCGCCAGCAAGTCTACAAAATCTATGATTTCCTTCAATCCACCAGCAGTC
CCCAAAAATGGCTGAACGAGTCTTTCCTCAAAGGGTTTGAAGAAGCTGACTTTGCAAATGAAAAAGACAAACTAACTGAG
CAAATCAAGCAGGCGCTTTGGGACTTGGAAAGTTTCTTCCGTTATCATCTGGATAACGATGCCAAGGAGTTTCCAAAAGC
TGCCTATTTAGAAAATGTGCAGCTGGTTCTGGATGAAATTAGCTCCTTAAATCAGGAGTCCGATAGCCAGGCTTATCAAG
CAGTGCTTACGCGTGTTGTCGTCATCTCTAAGGAGAAAAATGGTCGAGCTCTGGCTAACTCCAGTCGTAAGGCCGATTTA
AAGCCACTTGTTGATGCCTACAACGAAGAGAGAAAGGCCCAGTTTGCTAAACTAGGACAACTGGCGGACCAGATAACGAT
TCTCGACTACCAAGAACATTATCATGAAGATACTTGGGATCTAGCTAAAACCTTCCAAAACTTTATGAGTGATTTTGTGA
ATGCTTATCGTGAACGTAAACGCCAGGAAAATGCCTTTGAATTTGCTGATATCAGTCATTACACCATTGAGGTTTTAGAG
AATTTCCCACAAGTCCGCGAGGCTTATCAGGAACGATTCCATGAAGTCATGGTCGATGAGTATCAGGATACCAACCACAT
TCAAGAACGAATGCTGGAATTGCTGTCGAATGGTCACAATCGCTTTATGGTGGGAGATATCAAGCAGTCCATCTACCGGT
TCCGTCAGGCAGATCCTCAGATCTTCAATGAAAAATTCCAACGCTATGCGCAAAATCCCCAAGAAGGCAAGTTGATTCTC
CTCAAGGAAAATTTCCGTAGTAGTTCAGAAGTTCTGTCAGCAACCAATGATGTTTTTGCACGCCTTATGGACCAAGAAGT
CGGAGAAATCAACTACGATAGCATGCACCAGCTTGTTTTTGCCAATACCAAACTGACTCCTAATCCTGAGAACAAGGCAG
AGTTTCTCTTATACGACAAGGACGATAGTGGGCAAGAGGAGGAAGAGAGCCAAGCAGAAACGAAACTCACTGGAGAAATG
CGTCTGGTCATCAAGGAAATCTTGAAGCTCCATCAAGAGAAAGGTGTAGCCTTTAAAGAAATAGCCCTTTTGACTTCCAG
TCGCAGTCGAAATGACCAGATCCTCCTAGCTCTGTCTGAGTACGGAATTCCAGTTAAAACCGACGGTGAGCAAAACAACT
ACCTCCAATCCCTAGAAGTACAAGTCATGCTGGACACCCTGCGCGTCATTCACAATCCCCTGCAAGACTATGCCTTGGTA
GCCCTTATGAAGTCTCCTATGTTTGGTTTTGATGAGGACGAGTTGGCACGTTTATCCCTCCAGAAAGCAGAAGATAAAGT
CCAAGAGAATCTTTTTGAGAAACTGATCAATGCTCAAAAACAAGCAGCTAGGCAGAAAGAGTTAATTCATACAGCTCTAG
CGGAAAAATTAAATCAATTCATGGATATCTTGGATTCTTGGCGCCTGTATGCCAAAACTCACTCTCTCTATGACTTGATT
TGGAAGATTTACAACGACCGTTTTTATTATGACTATGTTGGGGCTTTGCCGAACGGACCTGCTAGACAGGCTAATCTCTA
TGCCCTAGCTCTACGAGCTGACCAGTTTGAAAAGAGCAATTTCAAGGGCTTGTCGCGTTTTATCCGTATGATTGACCAAG
TCCTAGAAGCCCAGCACGATCTCGCAAGCGTAGCCGTCGCACCGCCAAAAGATGCTGTAGAACTTATGACCATTCACAAG
AGTAAAGGACTAGAGTTTCCTTATGTCTTTATCCTCAACATGGATCAGGACTTCAACAAACAAGACTCGACGTCAGACGT
CATTCTCAGTCGTCAAAATGGGCTTGGTGTCAAATACATTGCCAAGGTGGAAACAGGAGCAGTGGAAGCACACTATCCTA
AAACCATTAAACTCTCTATTCCTAGCTTAACTTATACGCAGAATGAGAAAGAACTGCAACTGGCTAGCTATTCAGAGCAG
ATGCGTCTGCTGTATGTTGCCATGACGAGAGCTGAGAAAAAGCTCTATCTTGTCGGCAAGGGTTCTCGTGAAAAGCTAGA
AGCAAAGGAATATCCATCAGCTGAGAGCGGAAAATTAGATAGCAATACCAGACTGCAAGCAAGAAATTTCCAAGATTGGG
TCTGGGCTATCAGTAAAGTATTTACCAAGGACAATCTCAACTTTAGCTATCGTTTTGTTGGTGAAGACCTGTTGACTAGA
GAAGCTATTGGTCAATTGGAAAACAAGAGCCCTCTCCAAGATAGCTCTCAAGCAGACAATCGCCAGTCAGAAACTATCAA
AGAAGCTTTGGAAATGCTGAAAGAGGTGGAAGTTTATAATACTCTTCACCGCGCAGCCATTGAACTACCAAGTGTTCAAA
CCCCAAGCCAAATCAAGAAATTCTACGAACCGGTTATGGATATGGAAGGGGTAGAAATTACTAACCAAACTCAATCATCG
GAAAAGAAAATCAGCTTTGATTTACCAGATTTTTCAACTAAAGAAAAGGTAACTGGAGCTGAGATTGGTAGTGCAACCCA
CGAACTCATGCAAAGAATTGACCTCATTCAGCAACCAACACTTGCTAGCCTGACAGAAACTCTCAAACAAGTTCAGACTA
GTCCAGCTGTTAGAGACAAGATCAATCTTTCTAAAATTCTTGCCTTCTTTGATACAGCACTTGGTCAGGAAATTCTCGCT
AATACCAGCCATCTTTACCGCGAGCAACCTTTCTCCATGCTCAAAAAAGATCAAAAGAGTAAGGAAGATTTCGTTGTCCG
TGGAATCTTGGATGGCTATCTGCTTTATGAGGATCGCATCGTTCTTTTCGACTACAAAACAGACCGTTACGATGAACCAA
GTCAACTCATAGACCGCTATCGTGGTCAGTTAGCCTTATACGGAGAGGCTTTATCTAGAGCCTATTCGATTGAAAACATA
GAAAAATACTTGATTTTGCTCGGCAAAGACGAGGTTCAAGTTGTAAAAGTATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(479-897)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

91.865

100

0.919

Multiple sequence alignment