Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | BS064_RS11910 | Genome accession | NZ_CP018254 |
| Coordinates | 2426477..2426857 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain AF-401 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2421477..2431857
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BS064_RS11880 (BS064_11905) | tadA | 2421595..2422098 (-) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
| BS064_RS11885 (BS064_11910) | - | 2422105..2423229 (-) | 1125 | WP_086241960.1 | enoyl-CoA hydratase/isomerase family protein | - |
| BS064_RS11890 (BS064_11915) | ung | 2423226..2423939 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| BS064_RS11895 (BS064_11920) | - | 2423990..2424586 (-) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| BS064_RS11900 (BS064_11925) | gspK | 2424817..2425776 (-) | 960 | WP_000301471.1 | type II secretion system minor pseudopilin GspK | - |
| BS064_RS11905 (BS064_11930) | xcpW | 2425776..2426477 (-) | 702 | WP_000594590.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| BS064_RS11910 (BS064_11935) | xcpV | 2426477..2426857 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| BS064_RS11915 (BS064_11940) | - | 2426847..2427401 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| BS064_RS11920 (BS064_11945) | - | 2427411..2428019 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| BS064_RS11925 (BS064_11950) | - | 2428057..2428830 (-) | 774 | WP_000497301.1 | TatD family hydrolase | - |
| BS064_RS11930 (BS064_11955) | - | 2428848..2429189 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| BS064_RS11935 (BS064_11960) | - | 2429201..2430181 (-) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| BS064_RS11940 (BS064_11965) | kdsB | 2430193..2430954 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=207688 BS064_RS11910 WP_000836911.1 2426477..2426857(-) (xcpV) [Acinetobacter baumannii strain AF-401]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=207688 BS064_RS11910 WP_000836911.1 2426477..2426857(-) (xcpV) [Acinetobacter baumannii strain AF-401]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |