Detailed information    

insolico Bioinformatically predicted

Overview


Name   mecA   Type   Regulator
Locus tag   L_RS09355 Genome accession   NC_002662
Coordinates   1853731..1854432 (-) Length   233 a.a.
NCBI ID   WP_004255173.1    Uniprot ID   S6FFV7
Organism   Lactococcus lactis subsp. lactis Il1403     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 1848731..1859432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L_RS09335 (L32195) - 1848841..1850058 (-) 1218 WP_004255189.1 cysteine desulfurase -
  L_RS09340 (L33412) sufD 1850058..1851317 (-) 1260 WP_370566514.1 Fe-S cluster assembly protein SufD -
  L_RS09345 (L34806) sufC 1851452..1852222 (-) 771 WP_004255181.1 Fe-S cluster assembly ATPase SufC -
  L_RS09350 (L35751) - 1852397..1853728 (-) 1332 WP_010906141.1 glycosyltransferase family 4 protein -
  L_RS09355 (L37085) mecA 1853731..1854432 (-) 702 WP_004255173.1 adaptor protein MecA Regulator
  L_RS09360 (L37916) - 1854562..1855296 (-) 735 WP_004255171.1 amino acid ABC transporter ATP-binding protein -
  L_RS09365 (L38650) - 1855296..1855982 (-) 687 WP_004255158.1 amino acid ABC transporter permease -
  L_RS09370 (L39484) - 1856130..1857038 (-) 909 WP_003130548.1 diacylglycerol/lipid kinase family protein -

Sequence


Protein


Download         Length: 233 a.a.        Molecular weight: 27077.46 Da        Isoelectric Point: 4.1246

>NTDB_id=20765 L_RS09355 WP_004255173.1 1853731..1854432(-) (mecA) [Lactococcus lactis subsp. lactis Il1403]
MKYEDINENTIKITLSFDDLTDYDIKLSDFFGNQEVIEQFFYELVDELGLENRFGNVGMLTFQIQPFPQGVHMIVHEEAM
LGEGGEIPDDPEEFEELMTGFYNKLNEIGADMARERGITDFKPGLGLPGTKKDEAEQEPDFIYYSIRYEDIMSVLTGIKN
VKFADEESEFYRYDGNFYLVVLDNQKEKGKMHVESTRSRMMEYGEATKMSREFLQEYGECLIATRALDVLRKI

Nucleotide


Download         Length: 702 bp        

>NTDB_id=20765 L_RS09355 WP_004255173.1 1853731..1854432(-) (mecA) [Lactococcus lactis subsp. lactis Il1403]
ATGAAATATGAGGATATAAACGAAAATACTATAAAAATCACCTTGTCTTTTGATGATTTGACAGATTATGATATCAAATT
ATCAGACTTTTTCGGAAATCAAGAAGTCATTGAACAATTTTTCTATGAATTGGTTGATGAGCTTGGTTTAGAAAATCGCT
TTGGAAATGTGGGAATGTTAACTTTCCAAATCCAACCTTTTCCTCAAGGTGTTCATATGATTGTTCATGAAGAAGCGATG
CTAGGTGAAGGTGGAGAAATTCCAGATGACCCAGAAGAGTTTGAAGAATTGATGACTGGTTTTTATAATAAATTAAATGA
AATAGGGGCAGATATGGCGCGCGAGCGAGGAATTACTGATTTTAAACCTGGGCTTGGTTTACCAGGAACAAAAAAAGACG
AAGCTGAACAAGAGCCAGATTTTATTTATTACTCTATTCGTTATGAAGATATTATGTCTGTCTTAACAGGAATAAAAAAT
GTGAAGTTTGCTGATGAAGAATCAGAGTTTTATCGTTATGATGGCAATTTTTATCTTGTTGTTTTGGATAATCAAAAAGA
AAAAGGCAAGATGCATGTCGAAAGTACCCGTTCACGAATGATGGAATATGGGGAAGCAACAAAAATGAGTCGAGAATTTT
TGCAGGAGTATGGTGAATGTCTTATCGCGACACGTGCTTTAGATGTTCTTAGAAAAATCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB S6FFV7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Lactococcus lactis subsp. lactis strain DGCC12653

99.571

100

0.996

  mecA Lactococcus lactis subsp. cremoris KW2

96.996

100

0.97


Multiple sequence alignment