Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC71_RS00955 Genome accession   NZ_CP023485
Coordinates   189655..190329 (+) Length   224 a.a.
NCBI ID   WP_005482037.1    Uniprot ID   Q87T86
Organism   Vibrio parahaemolyticus strain FORC_071     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 184655..195329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC71_RS00930 (FORC71_0161) - 184777..185727 (-) 951 WP_062852593.1 Kdo(2)-lipid IV(A) acyltransferase -
  FORC71_RS00935 (FORC71_0162) slmA 185733..186323 (-) 591 WP_005478760.1 nucleoid occlusion factor SlmA -
  FORC71_RS00940 (FORC71_0163) coaBC 186484..187683 (-) 1200 WP_120416469.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  FORC71_RS00950 (FORC71_0164) - 187868..189541 (+) 1674 WP_015296117.1 methyl-accepting chemotaxis protein -
  FORC71_RS00955 (FORC71_0165) radC 189655..190329 (+) 675 WP_005482037.1 DNA repair protein RadC Machinery gene
  FORC71_RS00960 (FORC71_0166) rpmB 190633..190869 (+) 237 WP_005467944.1 50S ribosomal protein L28 -
  FORC71_RS00965 (FORC71_0167) rpmG 190883..191053 (+) 171 WP_004410866.1 50S ribosomal protein L33 -
  FORC71_RS00970 (FORC71_0168) - 191229..191705 (+) 477 WP_021486880.1 hypothetical protein -
  FORC71_RS00975 (FORC71_0169) mutM 191808..192617 (+) 810 WP_025499276.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  FORC71_RS00980 (FORC71_0170) - 192727..193425 (+) 699 WP_017449080.1 glycosyltransferase family 25 protein -
  FORC71_RS00985 (FORC71_0171) - 193450..194394 (-) 945 WP_025525628.1 glycosyl transferase family 90 -
  FORC71_RS00990 (FORC71_0172) coaD 194391..194876 (-) 486 WP_017449082.1 pantetheine-phosphate adenylyltransferase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25334.11 Da        Isoelectric Point: 6.6112

>NTDB_id=207500 FORC71_RS00955 WP_005482037.1 189655..190329(+) (radC) [Vibrio parahaemolyticus strain FORC_071]
MILKALPNESMPREKLLQRGPQALTDAELLAIFLRTGTQGMNVIELADFLIQDFGSLRQLFSASEQEFCQHKGLGQAKYV
QLQAVLEMTQRYLAETLKRGDALTSPEQTKLYLSSILRDRQREAFYILFLDNQHRVIKDEILFEGTLDAASVYPREVVKR
ALHHNAAALILAHNHPSGVAEPSQADRRITRRLIDALALVDIRILDHFVIGDGESVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=207500 FORC71_RS00955 WP_005482037.1 189655..190329(+) (radC) [Vibrio parahaemolyticus strain FORC_071]
ATGATACTCAAAGCTTTGCCAAATGAGTCGATGCCACGAGAGAAACTTCTGCAACGTGGGCCGCAGGCGTTAACCGATGC
CGAATTACTGGCGATATTTCTCCGTACGGGCACGCAAGGCATGAACGTGATTGAGTTGGCCGATTTCCTTATTCAAGATT
TTGGTTCGCTTAGGCAGCTGTTCTCTGCTTCAGAACAAGAGTTTTGTCAGCATAAAGGGTTAGGGCAGGCCAAATATGTG
CAATTGCAAGCGGTGTTAGAAATGACTCAGCGATATTTGGCGGAAACCCTCAAGCGTGGCGACGCCTTAACCAGCCCTGA
GCAAACTAAATTATATCTCTCCTCTATATTAAGAGACCGCCAAAGAGAGGCTTTTTACATTCTTTTCCTCGATAACCAAC
ACCGAGTAATAAAAGATGAAATTTTATTCGAAGGAACCTTGGATGCTGCATCAGTTTACCCTAGAGAAGTAGTAAAAAGA
GCCCTGCACCACAACGCGGCTGCTTTGATTTTGGCGCATAACCACCCGTCCGGTGTCGCCGAGCCAAGCCAGGCAGACCG
CAGGATTACAAGGCGATTAATTGATGCGTTGGCGCTGGTGGATATTCGTATTTTGGACCATTTCGTTATTGGCGATGGGG
AAAGTGTCTCTTTTGCTGAAAGAGGATGGATATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87T86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

51.613

96.875

0.5
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.739

99.107

0.384