Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   CO204_RS10560 Genome accession   NZ_CP023477
Coordinates   2074840..2075931 (+) Length   363 a.a.
NCBI ID   WP_002264240.1    Uniprot ID   -
Organism   Streptococcus mutans strain LAR01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2069840..2080931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO204_RS10535 (CO204_10480) pgsA 2070248..2070790 (-) 543 WP_002262451.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CO204_RS10540 (CO204_10485) - 2070802..2071779 (-) 978 WP_002268683.1 helix-turn-helix domain-containing protein -
  CO204_RS10545 (CO204_10490) - 2071852..2073144 (-) 1293 WP_002269589.1 pitrilysin family protein -
  CO204_RS10550 (CO204_10495) - 2073146..2074393 (-) 1248 WP_002293275.1 pitrilysin family protein -
  CO204_RS10555 (CO204_10500) yaaA 2074472..2074837 (+) 366 WP_002262455.1 S4 domain-containing protein YaaA -
  CO204_RS10560 (CO204_10505) recF 2074840..2075931 (+) 1092 WP_002264240.1 DNA replication/repair protein RecF Machinery gene
  CO204_RS10565 (CO204_10510) guaB 2076094..2077575 (-) 1482 WP_002262457.1 IMP dehydrogenase -
  CO204_RS10570 (CO204_10515) trpS 2077732..2078754 (-) 1023 WP_002264241.1 tryptophan--tRNA ligase -
  CO204_RS10575 (CO204_10520) - 2079188..2080807 (+) 1620 WP_002282692.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 42042.29 Da        Isoelectric Point: 9.8334

>NTDB_id=207490 CO204_RS10560 WP_002264240.1 2074840..2075931(+) (recF) [Streptococcus mutans strain LAR01]
MWIEKINLKHYRNYTAIESEFSQSLNVFVGQNAQGKTNFLEAIYFLSLTRSHRTRSDKELIQFGQKELNVSGLLNRVNGK
IPLEINLSNKGRTTKINYLKQPKLSDYIGTMTVVLFAPEDLQLIKGSPSLRRKFIDIDLGQIKPIYLSDLSNYNHVLKQR
NAYLKSEKKVDTDFLFVLDEQLVDYGSKVIEHRLDFIQNLTKEADKYHFSISNQQEHLKISYLSSVKFDHKKNIRDNFLN
LLQKNRQGDIFKKNTSVGPHRDDLAFFINQMNANFGSQGQHRSLILSLKLAEIELIKTVTGDYPILLLDDVMSELDNYRQ
IKLLEGIKDNVQTFITTTSLEHLQQLPKKLKLFTINQGKVLSE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=207490 CO204_RS10560 WP_002264240.1 2074840..2075931(+) (recF) [Streptococcus mutans strain LAR01]
ATGTGGATAGAAAAAATTAATTTAAAACATTATCGCAATTATACAGCCATTGAATCTGAATTTTCCCAAAGTCTTAATGT
TTTTGTGGGACAAAATGCTCAAGGAAAAACCAATTTCCTAGAGGCTATTTATTTTTTATCTTTAACCCGCAGTCATCGAA
CACGATCTGACAAAGAACTTATTCAATTTGGTCAAAAAGAATTAAATGTTTCTGGCCTTCTTAATCGTGTCAATGGCAAA
ATTCCTCTGGAAATCAACTTATCTAATAAAGGCCGAACAACAAAAATAAATTATCTCAAACAACCTAAACTTTCAGACTA
TATTGGAACAATGACTGTTGTTCTCTTTGCTCCAGAAGATCTTCAACTAATAAAAGGCTCCCCAAGTCTCAGAAGAAAGT
TTATTGACATTGATTTAGGACAAATCAAGCCTATTTACTTATCTGATTTATCAAATTATAATCATGTTCTTAAACAACGA
AATGCCTATTTAAAATCAGAGAAGAAGGTTGATACTGATTTTCTTTTCGTTCTAGATGAACAATTGGTAGATTATGGTAG
TAAGGTTATTGAGCATCGCCTTGATTTTATTCAAAATTTAACTAAAGAAGCTGATAAATATCATTTCTCTATTTCAAATC
AACAGGAACATTTAAAAATTTCCTACCTTTCTTCTGTTAAATTTGATCATAAAAAAAATATTCGTGATAACTTTTTAAAC
CTGCTACAAAAAAATCGGCAGGGTGATATTTTCAAAAAGAACACCAGTGTTGGTCCGCACCGCGATGATTTAGCCTTTTT
CATCAATCAAATGAACGCTAACTTTGGTAGTCAAGGACAACATCGCAGCCTTATTTTATCTTTAAAGCTGGCTGAGATTG
AACTTATAAAAACAGTCACTGGGGATTATCCTATTCTCTTGTTAGATGATGTCATGAGTGAACTTGATAATTATAGACAA
ATCAAACTTTTAGAAGGCATCAAAGATAATGTTCAGACCTTTATAACAACAACTAGCCTTGAACATCTTCAACAACTCCC
TAAGAAACTAAAGTTATTTACTATCAACCAAGGAAAAGTGCTATCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

64.722

99.174

0.642
  recF Bacillus subtilis subsp. subtilis str. 168

43.902

100

0.446