Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | NCTC11637_00058 | Genome accession | LS483488 |
| Coordinates | 62678..63253 (+) | Length | 191 a.a. |
| NCBI ID | SQJ01862.1 | Uniprot ID | - |
| Organism | Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 57678..68253
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NCTC11637_00053 | uvrD | 58369..60414 (+) | 2046 | SQJ01820.1 | DNA helicase II | - |
| NCTC11637_00054 | flgA | 60411..61067 (+) | 657 | SQJ01823.1 | putative P-ring biosynthesis protein | - |
| NCTC11637_00055 | ubiD_1 | 61077..61640 (+) | 564 | SQJ01826.1 | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase | - |
| NCTC11637_00056 | coaD | 61640..62113 (+) | 474 | SQJ01829.1 | pantetheine-phosphate adenylyltransferase | - |
| NCTC11637_00057 | tmk | 62115..62690 (+) | 576 | SQJ01832.1 | thymidylate kinase | - |
| NCTC11637_00058 | comFC | 62678..63253 (+) | 576 | SQJ01862.1 | HP1473-transformation associated protein | Machinery gene |
| NCTC11637_00059 | bcgIA | 63286..65325 (+) | 2040 | SQJ01865.1 | type II restriction modification enzyme methyltransferase | - |
| NCTC11637_00060 | bcgIB | 65322..66515 (+) | 1194 | SQJ01868.1 | type II restriction enzyme | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21310.80 Da Isoelectric Point: 8.4503
>NTDB_id=20744 NCTC11637_00058 SQJ01862.1 62678..63253(+) (comFC) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRANNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRANNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=20744 NCTC11637_00058 SQJ01862.1 62678..63253(+) (comFC) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAACAAGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAACAACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCCTGCAAGAACAAGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCGCCAACAACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
97.382 |
100 |
0.974 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.269 |
100 |
0.366 |