Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC72_RS16450 Genome accession   NZ_CP023472
Coordinates   3182022..3182696 (-) Length   224 a.a.
NCBI ID   WP_005482037.1    Uniprot ID   Q87T86
Organism   Vibrio parahaemolyticus strain FORC_072     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3177022..3187696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC72_RS16420 (FORC72_2872) coaD 3177051..3177533 (+) 483 WP_029804890.1 pantetheine-phosphate adenylyltransferase -
  FORC72_RS16425 (FORC72_2873) - 3177545..3179563 (-) 2019 WP_025441160.1 alkaline phosphatase family protein -
  FORC72_RS16430 (FORC72_2874) mutM 3179734..3180543 (-) 810 WP_120459144.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  FORC72_RS16435 (FORC72_2875) - 3180646..3181122 (-) 477 WP_021451729.1 hypothetical protein -
  FORC72_RS16440 (FORC72_2876) rpmG 3181298..3181468 (-) 171 WP_004410866.1 50S ribosomal protein L33 -
  FORC72_RS16445 (FORC72_2877) rpmB 3181482..3181718 (-) 237 WP_005467944.1 50S ribosomal protein L28 -
  FORC72_RS16450 (FORC72_2878) radC 3182022..3182696 (-) 675 WP_005482037.1 DNA repair protein RadC Machinery gene
  FORC72_RS16455 (FORC72_2879) - 3182810..3184483 (-) 1674 WP_029795411.1 methyl-accepting chemotaxis protein -
  FORC72_RS16465 (FORC72_2880) coaBC 3184668..3185867 (+) 1200 WP_120459145.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  FORC72_RS16470 (FORC72_2881) slmA 3186028..3186618 (+) 591 WP_005478760.1 nucleoid occlusion factor SlmA -
  FORC72_RS16475 (FORC72_2882) - 3186624..3187574 (+) 951 WP_017449076.1 Kdo(2)-lipid IV(A) acyltransferase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25334.11 Da        Isoelectric Point: 6.6112

>NTDB_id=207368 FORC72_RS16450 WP_005482037.1 3182022..3182696(-) (radC) [Vibrio parahaemolyticus strain FORC_072]
MILKALPNESMPREKLLQRGPQALTDAELLAIFLRTGTQGMNVIELADFLIQDFGSLRQLFSASEQEFCQHKGLGQAKYV
QLQAVLEMTQRYLAETLKRGDALTSPEQTKLYLSSILRDRQREAFYILFLDNQHRVIKDEILFEGTLDAASVYPREVVKR
ALHHNAAALILAHNHPSGVAEPSQADRRITRRLIDALALVDIRILDHFVIGDGESVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=207368 FORC72_RS16450 WP_005482037.1 3182022..3182696(-) (radC) [Vibrio parahaemolyticus strain FORC_072]
ATGATACTCAAAGCTTTGCCAAATGAGTCGATGCCACGAGAGAAACTTCTGCAACGTGGGCCGCAGGCGTTAACCGATGC
CGAATTACTGGCGATATTCCTCCGTACGGGCACGCAAGGCATGAACGTGATTGAGTTGGCCGATTTCCTTATTCAAGATT
TTGGTTCGCTTAGGCAGTTGTTCTCCGCTTCAGAACAGGAGTTTTGTCAGCATAAAGGGTTAGGGCAGGCCAAATATGTG
CAATTGCAAGCGGTGTTAGAAATGACTCAGCGATATTTGGCGGAAACCCTCAAGCGTGGCGACGCCTTAACCAGCCCTGA
GCAAACTAAATTATATCTTTCCTCTATATTAAGAGACCGCCAAAGAGAGGCTTTTTACATTCTTTTCCTCGATAACCAAC
ACCGAGTAATAAAAGATGAGATTTTATTCGAAGGAACCTTGGATGCCGCATCAGTTTACCCTAGAGAAGTAGTAAAAAGA
GCCCTGCACCACAACGCGGCTGCTTTGATTTTGGCGCATAACCACCCGTCCGGTGTCGCCGAGCCAAGCCAGGCAGACCG
CAGGATTACAAGGCGATTAATTGATGCGTTGGCGCTGGTGGATATTCGCATTTTGGACCATTTCGTTATTGGCGATGGGG
AAAGTGTCTCTTTTGCTGAAAGAGGATGGATATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87T86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

51.613

96.875

0.5
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.739

99.107

0.384