Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LJ046_RS02075 Genome accession   NZ_CP018218
Coordinates   382911..383489 (+) Length   192 a.a.
NCBI ID   WP_002879431.1    Uniprot ID   -
Organism   Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 377911..388489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJ046_RS02060 (LJ046_02050) gyrB 377915..379876 (+) 1962 WP_002879426.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LJ046_RS02065 (LJ046_02055) gyrA 379889..382360 (+) 2472 WP_002879428.1 DNA gyrase subunit A -
  LJ046_RS02070 (LJ046_02060) rpsF 382577..382870 (+) 294 WP_002879429.1 30S ribosomal protein S6 -
  LJ046_RS02075 (LJ046_02065) ssb 382911..383489 (+) 579 WP_002879431.1 single-stranded DNA-binding protein Machinery gene
  LJ046_RS02080 (LJ046_02070) rpsR 383516..383752 (+) 237 WP_002879432.1 30S ribosomal protein S18 -
  LJ046_RS02085 (LJ046_02075) - 383893..385914 (+) 2022 WP_002879433.1 DHH family phosphoesterase -
  LJ046_RS02090 (LJ046_02080) rplI 385937..386392 (+) 456 WP_002879434.1 50S ribosomal protein L9 -
  LJ046_RS02095 (LJ046_02085) dnaB 386416..387786 (+) 1371 WP_002879435.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 20725.35 Da        Isoelectric Point: 4.4606

>NTDB_id=207365 LJ046_RS02075 WP_002879431.1 382911..383489(+) (ssb) [Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046]
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNGGFGGQGQSQNTGFNTGFGGGSGYANDNAFGSPAQSNGPANAGFN
EDNKKDADGDTNTNPFDSSDDAINVSNDDLPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=207365 LJ046_RS02075 WP_002879431.1 382911..383489(+) (ssb) [Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046]
ATGATCAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCTGAGAATTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGAATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTCACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACGGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGGCAGCGGCTACGCCAACGACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAAT
GAAGATAACAAGAAAGATGCCGACGGAGACACGAACACTAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAA
TGACGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.031

100

0.583
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.668

100

0.479

Multiple sequence alignment