Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LS838_RS00040 | Genome accession | NZ_CP018217 |
| Coordinates | 9256..9834 (+) | Length | 192 a.a. |
| NCBI ID | WP_050951859.1 | Uniprot ID | - |
| Organism | Lactobacillus delbrueckii subsp. allosunkii strain JCM 17838 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4256..14834
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LS838_RS00025 (LS838_00025) | gyrB | 4261..6222 (+) | 1962 | WP_050951857.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| LS838_RS00030 (LS838_00030) | gyrA | 6235..8706 (+) | 2472 | WP_050951858.1 | DNA gyrase subunit A | - |
| LS838_RS00035 (LS838_00035) | rpsF | 8922..9215 (+) | 294 | WP_003612647.1 | 30S ribosomal protein S6 | - |
| LS838_RS00040 (LS838_00040) | ssb | 9256..9834 (+) | 579 | WP_050951859.1 | single-stranded DNA-binding protein | Machinery gene |
| LS838_RS00045 (LS838_00045) | rpsR | 9861..10097 (+) | 237 | WP_003612635.1 | 30S ribosomal protein S18 | - |
| LS838_RS00050 (LS838_00050) | - | 10238..12259 (+) | 2022 | WP_050951860.1 | DHH family phosphoesterase | - |
| LS838_RS00055 (LS838_00055) | rplI | 12298..12753 (+) | 456 | WP_003612605.1 | 50S ribosomal protein L9 | - |
| LS838_RS00060 (LS838_00060) | dnaB | 12777..14147 (+) | 1371 | WP_003612625.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 20710.34 Da Isoelectric Point: 4.5343
>NTDB_id=207348 LS838_RS00040 WP_050951859.1 9256..9834(+) (ssb) [Lactobacillus delbrueckii subsp. allosunkii strain JCM 17838]
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRDRESRQQNGGFGGQGQSQNTGFNTGFGGDSGYANNNAFGSPAQSNGPANAGFN
EDNKKDAGGDTNTNPFDSSDDAINVSNDDLPF
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRDRESRQQNGGFGGQGQSQNTGFNTGFGGDSGYANNNAFGSPAQSNGPANAGFN
EDNKKDAGGDTNTNPFDSSDDAINVSNDDLPF
Nucleotide
Download Length: 579 bp
>NTDB_id=207348 LS838_RS00040 WP_050951859.1 9256..9834(+) (ssb) [Lactobacillus delbrueckii subsp. allosunkii strain JCM 17838]
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTAGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCGGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGAATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGATCGTGAAAGCCGTCAGCAAAACGGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGACAGCGGCTACGCCAACAACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAAT
GAAGATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAA
TGACGATCTTCCATTTTAA
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTAGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCGGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGAATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGATCGTGAAAGCCGTCAGCAAAACGGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGACAGCGGCTACGCCAACAACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAAT
GAAGATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAA
TGACGATCTTCCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
57.513 |
100 |
0.578 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
46.875 |
100 |
0.469 |