Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   BSR30_RS08165 Genome accession   NZ_CP018205
Coordinates   1602986..1603672 (-) Length   228 a.a.
NCBI ID   WP_001792568.1    Uniprot ID   A0A133PXY3
Organism   Staphylococcus aureus strain HG001 isolate RN1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1597986..1608672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR30_RS08145 rpsT 1598900..1599151 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  BSR30_RS08150 holA 1599196..1600170 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  BSR30_RS08155 comEC 1600227..1602428 (-) 2202 WP_001805151.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BSR30_RS08160 - 1602433..1602894 (-) 462 WP_000439693.1 ComE operon protein 2 -
  BSR30_RS08165 comEA 1602986..1603672 (-) 687 WP_001792568.1 ComEA family DNA-binding protein Machinery gene
  BSR30_RS08170 - 1603712..1604428 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  BSR30_RS08175 rsfS 1604431..1604784 (-) 354 WP_001088022.1 ribosome silencing factor -
  BSR30_RS08180 yqeK 1604785..1605369 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  BSR30_RS08185 nadD 1605359..1605928 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  BSR30_RS08190 yhbY 1605931..1606221 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  BSR30_RS08195 aroE 1606225..1607031 (-) 807 WP_000666761.1 shikimate dehydrogenase -
  BSR30_RS08200 yqeH 1607045..1608145 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=207248 BSR30_RS08165 WP_001792568.1 1602986..1603672(-) (comEA) [Staphylococcus aureus strain HG001 isolate RN1]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=207248 BSR30_RS08165 WP_001792568.1 1602986..1603672(-) (comEA) [Staphylococcus aureus strain HG001 isolate RN1]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133PXY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969

Multiple sequence alignment