Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   BSR30_RS07920 Genome accession   NZ_CP018205
Coordinates   1556319..1556765 (-) Length   148 a.a.
NCBI ID   WP_001790850.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HG001 isolate RN1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1551319..1561765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR30_RS07890 gcvPA 1552245..1553591 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  BSR30_RS07895 gcvT 1553611..1554702 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  BSR30_RS07900 - 1554861..1555385 (-) 525 WP_001015117.1 shikimate kinase -
  BSR30_RS07905 - 1555375..1555521 (-) 147 WP_001789879.1 hypothetical protein -
  BSR30_RS07910 comGF 1555618..1556115 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  BSR30_RS07915 comGE 1556033..1556332 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  BSR30_RS07920 comGD 1556319..1556765 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  BSR30_RS07925 comGC 1556743..1557054 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  BSR30_RS07930 comGB 1557068..1558138 (-) 1071 Protein_1485 competence type IV pilus assembly protein ComGB -
  BSR30_RS07935 comGA 1558110..1559084 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  BSR30_RS07940 - 1559136..1559759 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  BSR30_RS07945 - 1559756..1560085 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  BSR30_RS07950 - 1560085..1561071 (-) 987 WP_000161314.1 ROK family glucokinase -
  BSR30_RS07955 - 1561068..1561271 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17213.42 Da        Isoelectric Point: 10.3682

>NTDB_id=207243 BSR30_RS07920 WP_001790850.1 1556319..1556765(-) (comGD) [Staphylococcus aureus strain HG001 isolate RN1]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=207243 BSR30_RS07920 WP_001790850.1 1556319..1556765(-) (comGD) [Staphylococcus aureus strain HG001 isolate RN1]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment