Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   BSR30_RS04600 Genome accession   NZ_CP018205
Coordinates   907238..908224 (+) Length   328 a.a.
NCBI ID   WP_000959287.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HG001 isolate RN1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 902238..913224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR30_RS04575 opp4B 902451..903413 (+) 963 WP_000593417.1 oligopeptide ABC transporter permease -
  BSR30_RS04580 opp4C 903425..904306 (+) 882 WP_001180262.1 oligopeptide ABC transporter permease -
  BSR30_RS04585 trpS 904348..905337 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  BSR30_RS04590 spxA 905632..906027 (+) 396 WP_031926753.1 transcriptional regulator SpxA -
  BSR30_RS04595 mecA 906398..907117 (+) 720 WP_001217730.1 adaptor protein MecA -
  BSR30_RS04600 coiA 907238..908224 (+) 987 WP_000959287.1 competence protein CoiA Machinery gene
  BSR30_RS04605 pepF 908272..910080 (+) 1809 WP_000082731.1 oligoendopeptidase F -
  BSR30_RS04610 yjbH 910540..911346 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  BSR30_RS04615 - 911369..911734 (-) 366 WP_000214065.1 truncated hemoglobin YjbI -
  BSR30_RS04620 - 911838..912431 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  BSR30_RS04625 - 912617..912964 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38840.52 Da        Isoelectric Point: 9.7121

>NTDB_id=207234 BSR30_RS04600 WP_000959287.1 907238..908224(+) (coiA) [Staphylococcus aureus strain HG001 isolate RN1]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=207234 BSR30_RS04600 WP_000959287.1 907238..908224(+) (coiA) [Staphylococcus aureus strain HG001 isolate RN1]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTATTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.085

100

0.991
  coiA Staphylococcus aureus N315

97.866

100

0.979

Multiple sequence alignment