Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   BSR30_RS02540 Genome accession   NZ_CP018205
Coordinates   516850..517419 (+) Length   189 a.a.
NCBI ID   WP_000872873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HG001 isolate RN1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 511850..522419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR30_RS02515 cysE 513063..513710 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  BSR30_RS02520 cysS 513694..515094 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  BSR30_RS02525 - 515087..515491 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  BSR30_RS02530 rlmB 515499..516245 (+) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  BSR30_RS02535 - 516245..516769 (+) 525 WP_000664738.1 NYN domain-containing protein -
  BSR30_RS02540 sigH 516850..517419 (+) 570 WP_000872873.1 sigma-70 family RNA polymerase sigma factor Regulator
  BSR30_RS02545 rpmG 517534..517677 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  BSR30_RS02550 secE 517733..517915 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  BSR30_RS02555 nusG 517928..518476 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  BSR30_RS02560 rplK 518657..519079 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  BSR30_RS02565 rplA 519287..519979 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  BSR30_RS02570 rplJ 520251..520751 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  BSR30_RS02575 rplL 520794..521162 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  BSR30_RS02580 - 521337..521945 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23028.91 Da        Isoelectric Point: 9.4170

>NTDB_id=207229 BSR30_RS02540 WP_000872873.1 516850..517419(+) (sigH) [Staphylococcus aureus strain HG001 isolate RN1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=207229 BSR30_RS02540 WP_000872873.1 516850..517419(+) (sigH) [Staphylococcus aureus strain HG001 isolate RN1]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

98.413

100

0.984

Multiple sequence alignment