Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   Bateq7PJ16_RS18155 Genome accession   NZ_CP023409
Coordinates   3362301..3362936 (-) Length   211 a.a.
NCBI ID   WP_041333100.1    Uniprot ID   -
Organism   Bacillus subtilis strain 7PJ-16     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3357301..3367936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bateq7PJ16_RS18135 (Bateq7PJ16_3611) yvzF 3358358..3358543 (-) 186 WP_003221676.1 YvzF family protein -
  Bateq7PJ16_RS18140 (Bateq7PJ16_3612) gerAA 3358661..3360109 (+) 1449 WP_041333095.1 spore germination receptor protein GerAA -
  Bateq7PJ16_RS18145 (Bateq7PJ16_3613) gerAB 3360078..3361175 (+) 1098 WP_041333097.1 spore germination receptor protein GerAB -
  Bateq7PJ16_RS18150 (Bateq7PJ16_3614) gerAC 3361172..3362293 (+) 1122 WP_041333099.1 spore germination receptor protein GerAC -
  Bateq7PJ16_RS18155 (Bateq7PJ16_3615) vraR 3362301..3362936 (-) 636 WP_041333100.1 two-component system response regulator LiaR Regulator
  Bateq7PJ16_RS18160 (Bateq7PJ16_3616) liaS 3362914..3363996 (-) 1083 WP_041333103.1 two-component system sensor histidine kinase LiaS -
  Bateq7PJ16_RS18165 (Bateq7PJ16_3617) liaF 3363993..3364718 (-) 726 WP_003228510.1 LiaRS two-component regulatory system accessory protein LiaF -
  Bateq7PJ16_RS18170 (Bateq7PJ16_3618) liaG 3364752..3365624 (-) 873 WP_041333105.1 DUF4097 domain-containing protein -
  Bateq7PJ16_RS18175 (Bateq7PJ16_3619) liaH 3365725..3366402 (-) 678 WP_159377078.1 stress responsive protein LiaH -
  Bateq7PJ16_RS18180 (Bateq7PJ16_3620) liaI 3366429..3366809 (-) 381 WP_159377079.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23122.83 Da        Isoelectric Point: 5.3750

>NTDB_id=207227 Bateq7PJ16_RS18155 WP_041333100.1 3362301..3362936(-) (vraR) [Bacillus subtilis strain 7PJ-16]
MIRVLLIDDHEMVRMGLAAFLEAQPDIKVIGEASDGSEGVRLAVELSPDVILMDLVMEGMDGIQATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=207227 Bateq7PJ16_RS18155 WP_041333100.1 3362301..3362936(-) (vraR) [Bacillus subtilis strain 7PJ-16]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TAAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTAGCTGTGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTACAAAGCAAATTTGCCGGGAGCTTTCTGACCCGAAAATTATTGTG
CTCACAAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTAGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACAGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

51.905

99.526

0.517
  degU Bacillus subtilis subsp. subtilis str. 168

37.668

100

0.398

Multiple sequence alignment