Detailed information NTG0207198

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: JN853_RS03705
• Genome accession: NZ_CP018202
• Coordinates: 726231..727571 (-)
• Length: 446 a.a.
• NCBI ID: WP_003381273.1
• Uniprot ID: -
• Organism: Pseudomonas syringae pv. actinidiae ICMP 9853
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 721231..732571

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JN853_RS03695 (JN853_03635)	-	723956..725071 (-)	1116	WP_017683545.1	efflux RND transporter periplasmic adaptor subunit	-
JN853_RS03700 (JN853_03640)	-	725153..725770 (-)	618	WP_003381275.1	TetR/AcrR family transcriptional regulator	-
JN853_RS03705 (JN853_03645)	pilR	726231..727571 (-)	1341	WP_003381273.1	sigma-54-dependent transcriptional regulator	Regulator
JN853_RS03710 (JN853_03650)	pilS	727574..729169 (-)	1596	WP_003381271.1	sensor histidine kinase	Regulator
JN853_RS03715 (JN853_03655)	-	729159..729398 (-)	240	WP_057403016.1	PP0621 family protein	-
JN853_RS03720 (JN853_03660)	-	729528..730550 (-)	1023	WP_003381267.1	outer membrane protein assembly factor BamD	-
JN853_RS03725 (JN853_03665)	rluD	730700..731662 (+)	963	WP_003381266.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
JN853_RS03730 (JN853_03670)	pgeF	731659..732387 (+)	729	WP_003381265.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49951.07 Da
• Isoelectric Point: 6.8233

>NTDB_id=207198 JN853_RS03705 WP_003381273.1 726231..727571(-) (pilR) [Pseudomonas syringae pv. actinidiae ICMP 9853]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVNSALSLPCATQPVRSIDSRLLGDSPPMRTLRNQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRINKPFVPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSVGGQQEQVVDVRILCATHKDLNVEVAAGRFRQDLYYRLNVIELRVPSLRERREDIDQIAAS
VLRRLAGNGAQPVARLHAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQAQQGANLADIDNLE
DYLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=207198 JN853_RS03705 WP_003381273.1 726231..727571(-) (pilR) [Pseudomonas syringae pv. actinidiae ICMP 9853]
ATGAGCCCACGGCAAAAGATCCTGATAGTCGATGATGAGCCGGATATTCGCGAGCTTCTGGAGATCACCCTCGGGCGCAT
GAAGCTCGACACCCGCAGCGCTCGCAACGTTGCCGAGGCCCATGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGCCTGCCCGATGGCAACGGCCTGGAACTGGTGCAGCACATCCAGCACGGCTACCCCCATGTGCCGGTGGCG
ATGATCACCGCCCACGGCAATCTGGACACGGCGATTCATGCGTTGAAAGCCGGAGCCTTCGACTTTGTGACCAAACCGGT
AGACCTCAACCGGCTCCGCGAACTGGTCAATAGTGCGCTGAGCCTGCCCTGCGCCACCCAACCGGTACGCAGCATCGACA
GCCGGCTGCTGGGCGACTCACCGCCGATGCGTACCTTGCGTAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCCATT
TACATCAGCGGCGAGTCGGGCAGCGGCAAAGAGCTGGTAGCCCGGCTGATCCACGAGCAAGGGCCGCGCATCAACAAACC
CTTCGTGCCGGTCAACTGCGGGGCGATTCCATCCGAATTGATGGAGAGCGAATTCTTCGGCCATCGCAAAGGCAGCTTCA
GCGGTGCCCACGAAGACAAGCCGGGCCTATTCCAGGCGGCACACAACGGGACACTGTTCCTTGATGAGGTCGCCGATCTG
CCGCTGGCCATGCAGGTAAAACTGCTGCGCGCGATCCAGGAGAAGTCCATCCGCAGCGTCGGCGGTCAGCAGGAGCAGGT
CGTGGACGTGCGTATTCTGTGCGCCACCCACAAGGACCTGAATGTCGAAGTCGCTGCGGGCCGTTTCCGTCAGGACCTGT
ATTACCGGCTTAACGTGATCGAACTGCGTGTGCCTTCATTGCGCGAGCGGCGTGAAGATATCGATCAGATTGCAGCCAGC
GTTTTGCGACGGCTTGCCGGCAACGGCGCTCAGCCCGTCGCGCGCTTGCATGCGCAGGCTCTGGAAACACTGAAAAGTTA
TCGATTCCCTGGGAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACCCTCTGTGAAAACGATGAAATCCACG
CCAGCGACCTGCGCCTCGCCGAGTCCGCCAGCCCCCAGGCACAACAGGGTGCGAACCTGGCTGATATCGATAACCTGGAA
GACTACCTGGAAAGCATCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACCGCCGCGGCCGA
GCGGCTCAGTTTGTCATTCAGATCGTTGCGCTATCGGTTGAAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.104	99.327	0.776
pilR	Acinetobacter baumannii strain A118	48.478	100	0.5