Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BSO20_RS16710 Genome accession   NZ_CP018200
Coordinates   3411932..3412576 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain WS-8     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3406932..3417576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSO20_RS16680 (BSO20_16690) - 3407380..3407721 (-) 342 WP_032876795.1 hypothetical protein -
  BSO20_RS16690 (BSO20_16700) degQ 3408187..3408327 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  BSO20_RS16695 (BSO20_16705) - 3408535..3409395 (+) 861 WP_142925231.1 polyprenyl synthetase family protein -
  BSO20_RS19485 comX 3409364..3409537 (+) 174 WP_012118314.1 competence pheromone ComX -
  BSO20_RS16705 (BSO20_16715) - 3409551..3411851 (+) 2301 Protein_3248 histidine kinase -
  BSO20_RS16710 (BSO20_16720) comA 3411932..3412576 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  BSO20_RS16715 (BSO20_16725) - 3412598..3412981 (+) 384 WP_007613430.1 hotdog fold thioesterase -
  BSO20_RS16720 (BSO20_16730) mnhG 3413021..3413395 (-) 375 WP_007613429.1 monovalent cation/H(+) antiporter subunit G -
  BSO20_RS16725 (BSO20_16735) - 3413379..3413663 (-) 285 WP_017419420.1 Na(+)/H(+) antiporter subunit F1 -
  BSO20_RS16730 (BSO20_16740) - 3413663..3414139 (-) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  BSO20_RS16735 (BSO20_16745) - 3414145..3415626 (-) 1482 WP_032876804.1 Na+/H+ antiporter subunit D -
  BSO20_RS16740 (BSO20_16750) - 3415619..3415960 (-) 342 WP_032876807.1 Na(+)/H(+) antiporter subunit C -
  BSO20_RS16745 (BSO20_16755) - 3415960..3416391 (-) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=207155 BSO20_RS16710 WP_003152052.1 3411932..3412576(+) (comA) [Bacillus amyloliquefaciens strain WS-8]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=207155 BSO20_RS16710 WP_003152052.1 3411932..3412576(+) (comA) [Bacillus amyloliquefaciens strain WS-8]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTTGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGTCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment