Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   Bateq7PJ16_RS05480 Genome accession   NZ_CP023409
Coordinates   1056345..1056992 (+) Length   215 a.a.
NCBI ID   WP_041851036.1    Uniprot ID   -
Organism   Bacillus subtilis strain 7PJ-16     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1051345..1061992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bateq7PJ16_RS05465 (Bateq7PJ16_1048) glpD 1051516..1053183 (+) 1668 WP_021479678.1 glycerol-3-phosphate dehydrogenase -
  Bateq7PJ16_RS05470 (Bateq7PJ16_1049) pgcA 1053315..1055060 (+) 1746 WP_046160373.1 phosphoglucomutase -
  Bateq7PJ16_RS05475 (Bateq7PJ16_1050) yhcY 1055209..1056348 (+) 1140 WP_159376733.1 two-component system sensor histidine kinase YhcY -
  Bateq7PJ16_RS05480 (Bateq7PJ16_1051) vraR 1056345..1056992 (+) 648 WP_041851036.1 two-component system response regulator YhcZ Regulator
  Bateq7PJ16_RS05485 (Bateq7PJ16_1052) yhdA 1056989..1057513 (+) 525 WP_003244703.1 FMN-dependent NADPH-azoreductase -
  Bateq7PJ16_RS05490 (Bateq7PJ16_1053) yhdB 1057528..1057770 (-) 243 WP_003233373.1 YhdB family protein -
  Bateq7PJ16_RS05495 (Bateq7PJ16_1054) yhdC 1057971..1058294 (+) 324 WP_003233371.1 YqzG/YhdC family protein -
  Bateq7PJ16_RS05500 (Bateq7PJ16_1055) lytF 1058336..1059766 (-) 1431 WP_159376734.1 peptidoglycan endopeptidase LytF -
  Bateq7PJ16_RS05505 (Bateq7PJ16_1056) nsrR 1059920..1060360 (-) 441 WP_014476271.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24190.87 Da        Isoelectric Point: 6.5033

>NTDB_id=207135 Bateq7PJ16_RS05480 WP_041851036.1 1056345..1056992(+) (vraR) [Bacillus subtilis strain 7PJ-16]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGIEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPETNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSKAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=207135 Bateq7PJ16_RS05480 WP_041851036.1 1056345..1056992(+) (vraR) [Bacillus subtilis strain 7PJ-16]
ATGAAAATTGTAATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACCGGAATAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGAGACGAATATCATTGTGCTA
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTAAAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCAAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGACCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CGAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.053

100

0.4