Detailed information NTG0207132

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BSO20_RS09920
• Genome accession: NZ_CP018200
• Coordinates: 2078884..2080032 (-)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain WS-8
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2073884..2085032

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSO20_RS09890 (BSO20_09895)	-	2074020..2074778 (-)	759	WP_007609404.1	ABC transporter ATP-binding protein	-
BSO20_RS09895 (BSO20_09900)	-	2074772..2075719 (-)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
BSO20_RS09900 (BSO20_09905)	ceuB	2075709..2076662 (-)	954	WP_032872883.1	ABC transporter permease	Machinery gene
BSO20_RS09905 (BSO20_09910)	-	2077076..2078440 (+)	1365	WP_007609394.1	aspartate kinase	-
BSO20_RS09910 (BSO20_09915)	-	2078520..2078630 (+)	111	WP_369878517.1	YjcZ family sporulation protein	-
BSO20_RS09915 (BSO20_09920)	phrC	2078781..2078900 (-)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
BSO20_RS09920 (BSO20_09925)	rapC	2078884..2080032 (-)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
BSO20_RS09925 (BSO20_09930)	-	2080185..2081618 (-)	1434	WP_161503657.1	sensor histidine kinase	-
BSO20_RS09930 (BSO20_09935)	-	2081605..2082288 (-)	684	WP_032872879.1	response regulator transcription factor	-
BSO20_RS09935 (BSO20_09940)	-	2082501..2083931 (+)	1431	WP_032872876.1	ABC transporter permease	-
BSO20_RS09940 (BSO20_09945)	-	2083946..2084629 (+)	684	WP_032872874.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=207132 BSO20_RS09920 WP_007410270.1 2078884..2080032(-) (rapC) [Bacillus amyloliquefaciens strain WS-8]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=207132 BSO20_RS09920 WP_007410270.1 2078884..2080032(-) (rapC) [Bacillus amyloliquefaciens strain WS-8]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTACCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAGGGGCTTCTCGATTATTACGTCAATTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCATGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTGGAGCAGGACACATATAACGTCCGGATTATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568