Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HI_0443 Genome accession   L42023
Coordinates   464716..465318 (+) Length   200 a.a.
NCBI ID   AAC22102.1    Uniprot ID   -
Organism   Haemophilus influenzae Rd KW20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 459716..470318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HI_0439 comA 459749..460546 (-) 798 AAC22098.1 competence protein A (comA) Machinery gene
  HI_0440 - 460645..463239 (+) 2595 AAC22099.1 penicillin-binding protein 1A (ponA) -
  HI_0441 - 463327..464172 (+) 846 AAC22100.1 orfJ protein -
  HI_0442 - 464289..464654 (+) 366 AAC22101.1 conserved hypothetical protein -
  HI_0443 recR 464716..465318 (+) 603 AAC22102.1 recombination protein (recR) Machinery gene
  HI_0444 - 465334..467289 (+) 1956 AAC22103.1 DNA topoisomerase III (topB) -
  HI_0445 - 467398..467736 (+) 339 AAC22104.1 protein-export membrane protein (secG) -
  HI_0446 - 468265..469935 (-) 1671 AAC22105.1 PTS system, fructose-specific IIBC component (fruA) -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=20713 HI_0443 AAC22102.1 464716..465318(+) (recR) [Haemophilus influenzae Rd KW20]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=20713 HI_0443 AAC22102.1 464716..465318(+) (recR) [Haemophilus influenzae Rd KW20]
ATGCAAAGCAGTCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCAGGCGTAGGGCCTAAATCTGCGCAACG
TATGGCTTATCATCTTTTACAGCGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCCATGTCTAAAA
TTGGTCATTGTTCACAGTGTCGAGACTTTACGGAAGAAGACACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCAGATATTCAAGCGATTGAGCAAACGGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACATTTGTCTCCACTTGATGGTATTGGACCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAATCCAACGGTGGAAGGCGATGCGACGGCAAACTACATTGCTGAAATG
TGCCGCCAACATAATATCAAAGTGAGTCGTATCGCTCACGGTATCCCTGTCGGTGGTGAACTGGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTTGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43

Multiple sequence alignment