Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   BSO20_RS06260 Genome accession   NZ_CP018200
Coordinates   1383295..1383486 (-) Length   63 a.a.
NCBI ID   WP_003155061.1    Uniprot ID   A0AAE2TKK9
Organism   Bacillus amyloliquefaciens strain WS-8     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1378295..1388486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSO20_RS06235 (BSO20_06240) - 1378653..1379639 (-) 987 WP_029325950.1 ABC transporter ATP-binding protein -
  BSO20_RS06240 (BSO20_06245) - 1379813..1380598 (-) 786 WP_029325951.1 DUF2268 domain-containing protein -
  BSO20_RS06245 (BSO20_06250) fabF 1380681..1381919 (-) 1239 WP_032874451.1 beta-ketoacyl-ACP synthase II -
  BSO20_RS06250 (BSO20_06255) - 1381942..1382880 (-) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  BSO20_RS06255 (BSO20_06260) - 1383048..1383266 (+) 219 WP_032874450.1 hypothetical protein -
  BSO20_RS06260 (BSO20_06265) comZ 1383295..1383486 (-) 192 WP_003155061.1 ComZ family protein Regulator
  BSO20_RS06265 (BSO20_06270) med 1383499..1384452 (-) 954 WP_007610578.1 BMP family ABC transporter substrate-binding protein Regulator
  BSO20_RS06270 (BSO20_06275) - 1384542..1385108 (-) 567 WP_032874449.1 hypothetical protein -
  BSO20_RS06275 (BSO20_06280) - 1385191..1385925 (-) 735 WP_032874448.1 hypothetical protein -
  BSO20_RS06285 (BSO20_06290) - 1386184..1386369 (+) 186 WP_032874447.1 YjzD family protein -
  BSO20_RS06290 (BSO20_06295) - 1386406..1386585 (-) 180 WP_003155070.1 YjzC family protein -
  BSO20_RS06295 (BSO20_06300) argF 1386661..1387632 (-) 972 WP_032874446.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7203.33 Da        Isoelectric Point: 4.2259

>NTDB_id=207119 BSO20_RS06260 WP_003155061.1 1383295..1383486(-) (comZ) [Bacillus amyloliquefaciens strain WS-8]
MQHEKSLEFMQIAMKYLPEAKAELEKSGIDLSMEMIQPFMDLFTSVMAEAYELGRSDAGELNK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=207119 BSO20_RS06260 WP_003155061.1 1383295..1383486(-) (comZ) [Bacillus amyloliquefaciens strain WS-8]
ATGCAGCATGAAAAGTCTCTTGAATTTATGCAGATCGCAATGAAATACCTGCCGGAAGCAAAGGCGGAGCTTGAGAAATC
CGGCATAGATCTGTCTATGGAAATGATTCAGCCGTTTATGGACCTGTTTACATCGGTCATGGCGGAAGCGTATGAGCTTG
GCAGATCTGATGCCGGGGAGCTGAATAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

86.207

92.063

0.794

Multiple sequence alignment