Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AYT26_RS13975 Genome accession   NC_002570
Coordinates   2902594..2904291 (-) Length   565 a.a.
NCBI ID   WP_010898924.1    Uniprot ID   Q9K974
Organism   Halalkalibacterium halodurans C-125     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2897594..2909291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYT26_RS13955 (BH2772) - 2898346..2898543 (-) 198 WP_010898920.1 hypothetical protein -
  AYT26_RS13960 (BH2773) spo0A 2898687..2899490 (-) 804 WP_010898921.1 sporulation transcription factor Spo0A -
  AYT26_RS13965 (BH2774) - 2899777..2900994 (-) 1218 WP_041820428.1 ISL3-like element IS651 family transposase -
  AYT26_RS13970 (BH2775) spoIVB 2901153..2902466 (-) 1314 WP_010898923.1 SpoIVB peptidase -
  AYT26_RS13975 (BH2776) recN 2902594..2904291 (-) 1698 WP_010898924.1 DNA repair protein RecN Machinery gene
  AYT26_RS13980 (BH2777) ahrC 2904322..2904771 (-) 450 WP_010898925.1 transcriptional regulator AhrC/ArgR -
  AYT26_RS13985 (BH2778) - 2904971..2905789 (-) 819 WP_010898926.1 TlyA family RNA methyltransferase -
  AYT26_RS13990 (BH2779) dxs 2905797..2907686 (-) 1890 WP_010898927.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AYT26_RS13995 (BH2780) - 2907696..2908298 (-) 603 WP_010898928.1 hypothetical protein -
  AYT26_RS21115 - 2908500..2908661 (-) 162 WP_153231708.1 hypothetical protein -
  AYT26_RS21745 - 2908808..2908942 (+) 135 WP_276324543.1 hypothetical protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63725.68 Da        Isoelectric Point: 5.0021

>NTDB_id=20711 AYT26_RS13975 WP_010898924.1 2902594..2904291(-) (recN) [Halalkalibacterium halodurans C-125]
MLVELSIKQFAIIEQLTVSFDKGLTVLTGETGAGKSIIIDAIGLLLGGRGSAEYVRYGEKRAEIEGLFILEPKHPAFAKA
EALGIQADDGMIVLRRDVTNQGKSICRINGKLVTLGILREIGQSLVDIHGQHEHQTLLHKEQHLSLLDHFAGPPLETVLD
EYKELYKQYLALERQLAQLTENEKEMAQKTDLFQYQLKEIEAANLEPGEDKRLEAERLKLANAEKLFKSVHDAYNNLYGE
GRGLEWINNALTHIEDASSYDPELGKLQQHVQEQYYLLEEAMFTLRDYLDKLEFDPTRLEMIESRLHELQKLKRKYGDSV
DAIVEYASTIEEQLDSILHKDDRIKQLEQSLETMRLDLEVESAALTNIRKQIAMELTESIHEQLRALYMEKTSFEVKFHE
TAEGKKPFRENGVDDVEFYLSTNPGEPVKPLAKVASGGEISRIMLALKTIFSNHQGVTSVIFDEVDTGVSGRVAQAIAEK
IRHISVGSQVLCISHLPQVAAMADTHLYISKKEVGGRVTTEVRALKDEEKVEEIARMIAGVEMTELTKEHAKELLDLATS
IKCNH

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=20711 AYT26_RS13975 WP_010898924.1 2902594..2904291(-) (recN) [Halalkalibacterium halodurans C-125]
ATGCTCGTTGAGTTATCCATCAAACAATTTGCGATCATTGAACAATTAACAGTCTCTTTTGATAAAGGTTTAACCGTATT
GACAGGGGAAACGGGTGCTGGAAAATCAATTATCATTGATGCGATTGGTCTGCTGCTAGGAGGCCGAGGATCAGCGGAGT
ATGTCCGCTATGGCGAAAAACGAGCAGAGATTGAAGGCCTTTTTATATTGGAGCCGAAGCATCCTGCTTTTGCGAAAGCG
GAGGCCCTTGGAATACAAGCGGATGATGGGATGATCGTCTTAAGAAGAGATGTGACAAATCAAGGAAAGAGCATTTGTCG
GATTAATGGAAAGTTGGTCACGCTCGGAATCTTGAGAGAAATTGGTCAAAGCCTTGTGGATATCCATGGACAACATGAGC
ATCAAACATTGCTTCATAAAGAGCAGCATCTCTCACTACTCGATCATTTTGCGGGCCCTCCATTAGAGACTGTGTTGGAT
GAGTATAAGGAATTGTACAAGCAATACTTAGCGCTGGAAAGACAACTCGCTCAATTGACGGAAAACGAAAAAGAGATGGC
GCAAAAAACAGATTTATTTCAATACCAGTTAAAAGAAATTGAAGCCGCAAACCTTGAACCAGGTGAAGATAAACGACTTG
AAGCTGAACGATTAAAGCTGGCAAATGCAGAAAAGCTGTTTAAGTCTGTACATGATGCATACAATAATTTATATGGAGAA
GGGCGAGGACTTGAATGGATCAACAATGCCCTCACTCATATTGAAGACGCTTCGAGCTACGACCCAGAATTAGGTAAGCT
TCAACAACACGTACAGGAGCAGTATTATTTACTTGAAGAGGCGATGTTCACACTCCGTGACTATTTGGACAAGCTTGAGT
TTGATCCTACACGACTTGAAATGATTGAAAGCAGACTTCATGAACTGCAGAAGCTGAAACGTAAATATGGTGATTCAGTC
GACGCAATCGTGGAATACGCATCAACCATTGAGGAACAGCTTGATTCGATTTTACATAAAGATGACCGCATCAAACAATT
AGAGCAGTCATTGGAAACGATGCGACTCGATTTAGAAGTGGAAAGTGCTGCCTTAACAAACATTCGTAAGCAGATAGCAA
TGGAGCTAACCGAGTCAATTCATGAGCAGTTGCGCGCTCTCTACATGGAGAAAACGTCCTTCGAAGTAAAATTTCATGAA
ACAGCAGAAGGGAAGAAGCCCTTTCGTGAAAATGGCGTAGATGATGTAGAATTTTATTTATCCACCAATCCAGGGGAACC
AGTCAAGCCGTTAGCCAAAGTCGCTTCAGGTGGCGAGATTTCACGGATTATGCTCGCATTAAAGACAATCTTCTCCAATC
ATCAAGGCGTCACGTCCGTTATTTTCGATGAAGTGGATACAGGAGTAAGCGGACGTGTGGCGCAAGCAATAGCGGAAAAA
ATTCGCCACATTTCCGTCGGCTCGCAAGTTTTATGCATTTCTCATTTACCGCAAGTGGCTGCCATGGCAGATACGCACCT
CTACATTTCAAAAAAGGAAGTAGGGGGTAGGGTGACGACCGAAGTGCGAGCACTTAAGGATGAAGAAAAGGTGGAAGAGA
TCGCGCGAATGATCGCTGGCGTTGAAATGACAGAGCTGACAAAGGAGCACGCAAAGGAGCTTCTGGACCTAGCGACAAGC
ATCAAATGTAACCATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9K974

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

56.174

100

0.572

Multiple sequence alignment