Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BK815_RS04575 Genome accession   NZ_CP018199
Coordinates   904404..905273 (-) Length   289 a.a.
NCBI ID   WP_073504604.1    Uniprot ID   -
Organism   Staphylococcus succinus strain 14BME20     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 861971..924180 904404..905273 within 0


Gene organization within MGE regions


Location: 861971..924180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK815_RS04415 yfmH 862548..863834 (-) 1287 WP_073504585.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  BK815_RS04420 yfmF 863831..865123 (-) 1293 WP_073504586.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  BK815_RS04425 - 865134..865847 (-) 714 WP_073504587.1 GntR family transcriptional regulator -
  BK815_RS13490 - 865850..867301 (-) 1452 Protein_852 DNA translocase FtsK -
  BK815_RS13495 - 867472..868300 (-) 829 Protein_853 cell division protein FtsK -
  BK815_RS04435 rnjB 868611..870284 (-) 1674 WP_046836270.1 ribonuclease J2 -
  BK815_RS04440 pnp 870672..872771 (-) 2100 WP_073504589.1 polyribonucleotide nucleotidyltransferase -
  BK815_RS04445 rpsO 872924..873193 (-) 270 WP_046836268.1 30S ribosomal protein S15 -
  BK815_RS04450 - 873297..874268 (-) 972 WP_046836267.1 bifunctional riboflavin kinase/FAD synthetase -
  BK815_RS04455 truB 874282..875199 (-) 918 WP_073504590.1 tRNA pseudouridine(55) synthase TruB -
  BK815_RS04460 rbfA 875331..875675 (-) 345 WP_046836265.1 30S ribosome-binding factor RbfA -
  BK815_RS04465 - 876116..876988 (+) 873 WP_073504591.1 HTH domain-containing protein -
  BK815_RS04470 - 877084..878076 (-) 993 WP_226956412.1 hypothetical protein -
  BK815_RS04475 infB 878996..881095 (-) 2100 WP_073504593.1 translation initiation factor IF-2 -
  BK815_RS04480 - 881100..881417 (-) 318 WP_046836261.1 L7Ae/L30e/S12e/Gadd45 family ribosomal protein -
  BK815_RS04485 rnpM 881414..881698 (-) 285 WP_046836260.1 RNase P modulator RnpM -
  BK815_RS04490 nusA 881716..882909 (-) 1194 WP_073504594.1 transcription termination factor NusA -
  BK815_RS04495 rimP 882930..883397 (-) 468 WP_046836258.1 ribosome maturation factor RimP -
  BK815_RS04500 - 883631..887947 (-) 4317 WP_073504595.1 PolC-type DNA polymerase III -
  BK815_RS04505 - 888220..889920 (-) 1701 WP_073504596.1 proline--tRNA ligase -
  BK815_RS04510 rseP 889941..891227 (-) 1287 WP_073504597.1 RIP metalloprotease RseP -
  BK815_RS04515 - 891545..892327 (-) 783 WP_046836254.1 phosphatidate cytidylyltransferase -
  BK815_RS04520 - 892345..893109 (-) 765 WP_073504598.1 isoprenyl transferase -
  BK815_RS04525 frr 893343..893897 (-) 555 WP_046836252.1 ribosome recycling factor -
  BK815_RS04530 pyrH 893914..894636 (-) 723 WP_046836251.1 UMP kinase -
  BK815_RS04535 tsf 894770..895648 (-) 879 WP_073504599.1 translation elongation factor Ts -
  BK815_RS04540 rpsB 895743..896531 (-) 789 WP_046836249.1 30S ribosomal protein S2 -
  BK815_RS04545 codY 896784..897557 (-) 774 WP_069824241.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  BK815_RS04550 hslU 897582..898991 (-) 1410 WP_073504600.1 ATP-dependent protease ATPase subunit HslU -
  BK815_RS04555 hslV 899121..899663 (-) 543 WP_046836246.1 ATP-dependent protease subunit HslV -
  BK815_RS04560 xerC 899667..900557 (-) 891 WP_073504601.1 tyrosine recombinase XerC -
  BK815_RS04565 trmFO 900676..901983 (-) 1308 WP_073504602.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BK815_RS04570 topA 902142..904208 (-) 2067 WP_073504603.1 type I DNA topoisomerase -
  BK815_RS04575 dprA 904404..905273 (-) 870 WP_073504604.1 DNA-processing protein DprA Machinery gene
  BK815_RS04580 sucD 905625..906533 (-) 909 WP_073504605.1 succinate--CoA ligase subunit alpha -
  BK815_RS04585 sucC 906555..907721 (-) 1167 WP_073504606.1 ADP-forming succinate--CoA ligase subunit beta -
  BK815_RS04590 - 907829..908599 (-) 771 WP_073504607.1 ribonuclease HII -
  BK815_RS04595 ylqF 908608..909468 (-) 861 WP_073504608.1 ribosome biogenesis GTPase YlqF -
  BK815_RS04600 - 909871..912450 (+) 2580 WP_073504609.1 YfhO family protein -
  BK815_RS04605 - 912502..915111 (+) 2610 WP_073504610.1 YfhO family protein -
  BK815_RS04610 rplS 915302..915652 (-) 351 WP_046836235.1 50S ribosomal protein L19 -
  BK815_RS04615 trmD 915754..916491 (-) 738 WP_073504611.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BK815_RS04620 rimM 916491..916997 (-) 507 WP_046836233.1 ribosome maturation factor RimM -
  BK815_RS04625 rpsP 917265..917531 (-) 267 WP_069824254.1 30S ribosomal protein S16 -
  BK815_RS04630 - 918160..918912 (+) 753 WP_073504612.1 3-oxoacyl-ACP reductase -
  BK815_RS04635 - 918946..920247 (+) 1302 WP_404828297.1 LLM class flavin-dependent oxidoreductase -
  BK815_RS04640 ffh 920347..921714 (-) 1368 WP_046836229.1 signal recognition particle protein -
  BK815_RS04645 - 921740..922072 (-) 333 WP_046836228.1 putative DNA-binding protein -
  BK815_RS04650 ftsY 922059..923276 (-) 1218 WP_073504614.1 signal recognition particle-docking protein FtsY -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 33512.84 Da        Isoelectric Point: 9.8070

>NTDB_id=207079 BK815_RS04575 WP_073504604.1 904404..905273(-) (dprA) [Staphylococcus succinus strain 14BME20]
MKEYQFLKLRFSGLTTQQIRQLLKGYPYFLECNEIEQHYLLKQFLSILNVRRKTHIFNKFLNYNVEQILLQMQQWRVNYI
PITHPHYPQLLREIYDPPYILFYKGNISILQSPHTLAVIGSRNATQYTDKALRSLFPSFKKVNMTIVSGLAKGADYKAHR
YALSMDMPSIAVLGFGHLYHYPKETQGIRNQLEVEGLVISEYLPNQTPQKYYFPERNRLISGLSKGILITESKSVSGTRI
TTHCALEQNREVYVLPGSMFNELTKGNLLSAQEGAKIVLRPSDIINDFL

Nucleotide


Download         Length: 870 bp        

>NTDB_id=207079 BK815_RS04575 WP_073504604.1 904404..905273(-) (dprA) [Staphylococcus succinus strain 14BME20]
ATGAAAGAATACCAATTTTTAAAACTACGTTTTTCTGGATTGACTACACAGCAAATAAGACAACTTTTAAAAGGTTATCC
TTATTTCTTAGAGTGTAATGAAATTGAACAACATTATTTACTCAAACAGTTTTTATCTATTTTGAATGTTAGACGTAAAA
CACATATATTTAATAAATTTTTAAATTACAATGTCGAACAAATTTTATTACAAATGCAACAGTGGCGTGTAAATTATATA
CCGATTACACATCCCCATTATCCTCAATTACTACGGGAAATTTACGACCCTCCATATATACTTTTCTACAAAGGAAACAT
ATCTATATTACAATCGCCACACACATTGGCAGTCATTGGTTCAAGAAATGCTACTCAATATACAGACAAAGCATTACGCT
CTCTTTTTCCTTCATTTAAAAAAGTAAACATGACAATTGTTTCAGGTTTAGCTAAAGGTGCCGACTATAAGGCGCATCGA
TATGCGCTAAGTATGGATATGCCTTCTATTGCTGTGCTAGGTTTTGGACATTTGTATCATTATCCTAAAGAAACACAAGG
GATTAGAAATCAACTTGAAGTTGAAGGGCTAGTGATAAGCGAATACTTACCAAATCAAACCCCACAAAAATATTATTTTC
CCGAACGAAATAGATTAATTAGTGGATTATCCAAAGGCATATTAATTACAGAATCTAAGTCAGTAAGTGGCACACGTATT
ACGACTCATTGCGCCTTAGAACAAAATAGGGAAGTATATGTTTTGCCAGGATCCATGTTTAATGAATTGACAAAGGGTAA
TTTATTGAGTGCACAAGAAGGTGCAAAAATCGTTTTGAGACCAAGTGATATTATAAATGACTTTCTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

51.399

98.962

0.509
  dprA Staphylococcus aureus MW2

49.826

99.308

0.495

Multiple sequence alignment