Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BK815_RS02285 Genome accession   NZ_CP018199
Coordinates   451465..453852 (+) Length   795 a.a.
NCBI ID   WP_073504284.1    Uniprot ID   -
Organism   Staphylococcus succinus strain 14BME20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 446465..458852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK815_RS02265 sal 446710..448341 (+) 1632 WP_073504280.1 Sal family ABC-F type ribosomal protection protein -
  BK815_RS02270 - 448403..449545 (+) 1143 WP_073504281.1 cysteine desulfurase family protein -
  BK815_RS02275 mnmA 449546..450658 (+) 1113 WP_073504282.1 tRNA 2-thiouridine(34) synthase MnmA -
  BK815_RS02280 - 450796..451461 (+) 666 WP_073504283.1 tetratricopeptide repeat protein -
  BK815_RS02285 recD2 451465..453852 (+) 2388 WP_073504284.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BK815_RS02290 alaS 454206..456836 (+) 2631 WP_073504285.1 alanine--tRNA ligase -
  BK815_RS02295 - 456905..457165 (+) 261 WP_046836609.1 IreB family regulatory phosphoprotein -
  BK815_RS02300 ruvX 457169..457597 (+) 429 WP_046836608.1 Holliday junction resolvase RuvX -
  BK815_RS02305 - 457614..457940 (+) 327 WP_063410268.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89363.92 Da        Isoelectric Point: 4.5392

>NTDB_id=207072 BK815_RS02285 WP_073504284.1 451465..453852(+) (recD2) [Staphylococcus succinus strain 14BME20]
MEDPTLFTNSMIKGTVDAILFQNKENFYTVLKVDMIESNESFDSMPTIVGFFPEITEGDVYTFKGQVVTHSKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAINDILNNPEILEKVPGLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYMGDTLDIVKSKPYQLVYDVKGIGFNKADTLARNVGIQFNDAERLKAGLLYVLEEACIKQG
HTYLPTNNVLEMTQDMLSQPPAEVIDTQQLETVLQDLVSDTKLIQQENEVAIPSLYYSELKSVQNLYRNFSYTNKLKEIE
QSDLLLEIGDIEERNKVSYADSQREALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYQNDDYPVVLA
APTGRASKRLADATGLEAMTIHRLIGWNQDTSPEDILDNEISAKLIIIDEMSMVDTWLFHQFMSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGESIDITQRFHDRNFINCSTDQIPSVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLQHILNPKEKDTREIEFGDVFFRKGDKVLQLVNRPSDNIFNGDIGEIVGIFW
AKENALNKDVLVVDFEGNEITFTRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLQTHGQVRMTKLCSLLKAYFNNEPISEDEDINQSIDSETVLTESTMFKIDPMINMGTISPYDFVED

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=207072 BK815_RS02285 WP_073504284.1 451465..453852(+) (recD2) [Staphylococcus succinus strain 14BME20]
ATGGAAGACCCTACATTATTCACGAATTCTATGATTAAAGGCACTGTTGATGCAATTTTATTTCAAAATAAAGAGAACTT
TTATACAGTTTTAAAAGTAGATATGATTGAATCAAATGAATCATTCGATTCAATGCCTACAATTGTAGGGTTTTTTCCAG
AAATAACTGAAGGCGATGTCTATACTTTTAAAGGTCAAGTTGTTACCCATTCAAAATACGGCAAACAATTAAAGGCTGAA
ACATTTGAAAAGGAATTACCACAAACGAAAGAAGCGATTATAAGTTATTTATCTAGTGATTTATTTAAAGGTATAGGAAA
AAAAACAGCACAAAGCATCGTAAATAAATTAGGCGAAAATGCAATAAATGATATCTTAAATAATCCAGAAATATTAGAAA
AAGTACCAGGGTTACCTAAGAAAAAGCAAAAGCAAATTGCTGAGCAGATTGCGAGTAATCAAGAAACTGAACAAATCATT
ATACGTTTACATGATTTAGGATTTGGACCTAAACTTGCAATGGCTATTTATCAAGCTTACATGGGAGATACTCTTGACAT
AGTTAAAAGTAAACCGTATCAACTTGTTTATGATGTAAAAGGTATTGGCTTTAACAAGGCAGATACTTTAGCTAGGAATG
TTGGTATACAGTTTAATGATGCTGAACGTCTCAAGGCAGGCTTACTATATGTATTAGAAGAAGCGTGTATTAAACAAGGT
CATACTTATTTACCAACGAACAATGTATTAGAAATGACTCAAGATATGTTATCACAGCCACCAGCTGAGGTGATTGACAC
GCAACAATTAGAAACGGTATTACAAGATTTAGTTAGTGATACTAAGTTAATTCAACAAGAGAATGAAGTTGCTATACCCA
GTCTTTATTATTCAGAACTTAAAAGTGTGCAAAATTTATATCGTAATTTCAGCTATACCAACAAATTAAAAGAGATTGAA
CAATCGGACTTGTTACTTGAAATTGGCGATATTGAAGAAAGAAATAAAGTGTCATATGCAGACTCACAAAGAGAAGCGTT
ACAAACTGCAATCAATTCTAAAGTAATGTTACTTACTGGCGGTCCAGGTACAGGAAAAACGACAGTGATAAAAGGTATTG
TTGAGTTATACGCTGAAATTCATGGTTTATCTTTGGATTATGATGATTATCAAAACGATGATTATCCAGTGGTATTAGCA
GCGCCAACCGGAAGAGCTTCAAAACGATTGGCTGATGCCACGGGCTTAGAGGCAATGACAATTCATAGATTAATTGGATG
GAATCAGGATACATCACCAGAAGATATTTTAGATAATGAAATTTCGGCCAAATTGATTATTATAGACGAAATGTCTATGG
TTGATACATGGCTTTTTCATCAATTTATGAGTGCTGTACCGATAGATGCGCAAGTCATCCTAGTAGGTGATGAGGATCAA
TTACCTTCTGTTGGACCAGGACAAGTATTTAAAGATTTAATTGATTCTAAGGTCATACCTCGTGTGAATCTGACCGAAGT
CTATCGTCAACAAGATGGCTCAAGTATTATTGAATTGGCTCACAGAATGAAATTAGGTGAGTCCATAGATATTACGCAGC
GATTCCATGATCGTAATTTTATTAATTGTAGTACAGATCAAATCCCGTCTGTAGTAGAAAAAGTAGTGTCAAGCGCAGTG
AATAAAGGCTATGACATGAGTGACATACAAGTATTGGCTCCTATGTACAAGGGTTCGGCTGGTATTAAAAAGTTGAATAC
TGTATTACAACATATCTTAAATCCTAAAGAAAAAGATACACGAGAAATAGAATTTGGTGATGTGTTCTTTAGAAAAGGTG
ATAAAGTATTGCAATTGGTAAATAGACCGAGTGATAATATTTTTAATGGTGATATCGGCGAAATTGTTGGTATATTCTGG
GCAAAAGAAAATGCTTTAAATAAAGATGTACTTGTGGTTGATTTCGAGGGGAACGAAATTACATTTACACGTCAAGATTT
AATGGAATTGACACATGCTTATTGTACCTCAATCCATAAATCGCAAGGTTCAGAATTTCCAATTGTAATCATGCCGATGG
TAAAACAATACTTTAGAATGTTACAAAAGCCTATTTTATATACGGGTCTTACACGAGCTAAGCAATCTTTAGTATTTTTG
GGGGATCCGCAAGCGTTTGATATAGGATTGCAAACACATGGACAAGTGAGAATGACGAAACTATGTTCACTCTTGAAAGC
TTATTTCAATAATGAACCAATTTCAGAAGACGAAGATATCAATCAAAGTATTGATTCAGAAACAGTATTAACAGAATCTA
CAATGTTTAAAATTGATCCAATGATAAATATGGGAACTATTTCTCCATATGATTTCGTAGAAGATTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

Helix-hairpin-helix domain (HHH_5)

(103-149)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.748

99.874

0.497

Multiple sequence alignment