Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BK815_RS00315 Genome accession   NZ_CP018199
Coordinates   60265..60684 (+) Length   139 a.a.
NCBI ID   WP_073504034.1    Uniprot ID   A0A9Q6HMW4
Organism   Staphylococcus succinus strain 14BME20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 55265..65684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK815_RS00285 atpD 55414..56826 (+) 1413 WP_046837799.1 F0F1 ATP synthase subunit beta -
  BK815_RS00290 - 56846..57250 (+) 405 WP_073504032.1 F0F1 ATP synthase subunit epsilon -
  BK815_RS00295 - 57478..57711 (+) 234 WP_069823673.1 DUF1146 family protein -
  BK815_RS00300 murA 57813..59078 (+) 1266 WP_073504033.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  BK815_RS00305 fabZ 59136..59573 (+) 438 WP_069823675.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BK815_RS00310 - 59632..60075 (-) 444 WP_046837794.1 YwpF-like family protein -
  BK815_RS00315 ssb 60265..60684 (+) 420 WP_073504034.1 single-stranded DNA-binding protein Machinery gene
  BK815_RS00320 - 61155..61841 (+) 687 WP_073505775.1 transglycosylase family protein -
  BK815_RS00325 tenA 62165..62854 (+) 690 WP_073504035.1 thiaminase II -
  BK815_RS00330 thiD 62847..63665 (+) 819 WP_073504036.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  BK815_RS00335 thiM 63658..64449 (+) 792 WP_073504037.1 hydroxyethylthiazole kinase -
  BK815_RS00340 thiE 64453..65091 (+) 639 WP_073504038.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15886.11 Da        Isoelectric Point: 6.7062

>NTDB_id=207062 BK815_RS00315 WP_073504034.1 60265..60684(+) (ssb) [Staphylococcus succinus strain 14BME20]
MINNIVIVGRLTKAPKIFEKEGGKLATFCVAVSRNYKDKHQNTICDYLYCKAFGKIASNIEKYINQGSLVGITGQMQSRK
FTKEGQTHFVSEIYIETIKFMSSQSTVETEKVFEPFQLETNHESLDEITVQQNDIYETV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=207062 BK815_RS00315 WP_073504034.1 60265..60684(+) (ssb) [Staphylococcus succinus strain 14BME20]
ATGATAAATAATATCGTCATTGTAGGACGACTTACTAAAGCTCCAAAAATATTTGAAAAGGAGGGCGGTAAATTAGCTAC
ATTTTGTGTAGCAGTATCTAGAAACTATAAAGATAAGCATCAAAATACGATTTGTGACTATTTATATTGTAAAGCATTTG
GGAAGATAGCCAGTAATATTGAAAAATATATCAACCAAGGTTCACTGGTAGGTATTACAGGACAAATGCAATCACGTAAA
TTTACAAAAGAAGGACAGACACACTTTGTATCAGAAATTTATATTGAAACTATCAAATTTATGTCTTCACAATCAACAGT
TGAAACAGAAAAGGTATTTGAGCCATTCCAACTAGAAACCAACCATGAGTCATTAGATGAAATAACTGTACAACAAAATG
ATATATATGAAACTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

61.905

90.647

0.561
  ssb Staphylococcus aureus MW2

71.429

75.54

0.54

Multiple sequence alignment