Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BSL056_RS07815 Genome accession   NZ_CP018197
Coordinates   1562751..1563653 (+) Length   300 a.a.
NCBI ID   WP_073205168.1    Uniprot ID   -
Organism   Bacillus safensis strain KCTC 12796BP     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1557751..1568653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL056_RS07795 (BSL056_07820) - 1558414..1560153 (+) 1740 WP_073205166.1 glycosyltransferase -
  BSL056_RS07800 (BSL056_07825) - 1560150..1560425 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  BSL056_RS07805 (BSL056_07830) sucC 1560602..1561762 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  BSL056_RS07810 (BSL056_07835) sucD 1561785..1562687 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  BSL056_RS07815 (BSL056_07840) dprA 1562751..1563653 (+) 903 WP_073205168.1 DNA-processing protein DprA Machinery gene
  BSL056_RS07820 (BSL056_07845) topA 1563846..1565921 (+) 2076 WP_044330667.1 type I DNA topoisomerase -
  BSL056_RS07825 (BSL056_07850) trmFO 1565992..1567296 (+) 1305 WP_073205170.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BSL056_RS07830 (BSL056_07855) xerC 1567359..1568276 (+) 918 WP_024424182.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34044.36 Da        Isoelectric Point: 8.8768

>NTDB_id=207027 BSL056_RS07815 WP_073205168.1 1562751..1563653(+) (dprA) [Bacillus safensis strain KCTC 12796BP]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDFTRLKQAEENEFPMFQHIVQAYLKQNVHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRVPSSYGDACVKKIVGELVKEEWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHVYPKEHAQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSTGPARLIQQGAKLVHSTKDILEEFSFHSVQYTEPS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=207027 BSL056_RS07815 WP_073205168.1 1562751..1563653(+) (dprA) [Bacillus safensis strain KCTC 12796BP]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATGTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACGTTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACAAGAGTTCCATCATCTTATGGAGATGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTCAAGGAAGAGTGGATGATTGTCAGTGGTTTAGCTAAAGGAATCGATGGACTTGCACAT
AAAGAGTGCATCAGGAAAAAAGGAAAAACGATCGGCATTATAGCAGGCGGCTTTCAGCATGTATACCCAAAAGAACATGC
ACAAATGGCTCAATACATGGGCGAACATCATTTGCTTTTGTCAGAGCATCCGCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCATTGACGAAAGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCGCTTGAGCAAGGCAAAGAAGTATTTGCGGTTGCCGGATCCATCTTTGATTCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGGGCAAAGCTTGTTCATTCCACAAAGGATATTTTAGAGGAATTCTCCTTCCACAGCG
TTCAATATACTGAACCCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.167

96

0.52
  dprA Legionella pneumophila strain ERS1305867

37.705

100

0.383
  dprA Lactococcus lactis subsp. cremoris KW2

38.062

96.333

0.367

Multiple sequence alignment