Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SMA_2181 Genome accession   HE613569
Coordinates   2114342..2115436 (+) Length   364 a.a.
NCBI ID   CCF03472.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2109342..2120436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_2173 - 2109507..2109887 (-) 381 Protein_2172 Hypothetical protein -
  SMA_2174 - 2110173..2110265 (-) 93 CCF03465.1 Hypothetical protein -
  SMA_2175 - 2110301..2110618 (-) 318 CCF03466.1 Hypothetical protein -
  SMA_2176 - 2110840..2111214 (+) 375 Protein_2175 Hypothetical protein -
  SMA_2177 - 2111290..2112126 (+) 837 CCF03468.1 Inegral membrane protein -
  SMA_2178 - 2112224..2112850 (-) 627 Protein_2177 Transcriptional regulator, GntR family -
  SMA_2179 - 2113092..2113838 (+) 747 Protein_2178 D-mannonate oxidoreductase -
  SMA_2180 - 2113962..2114339 (+) 378 CCF03471.1 Hypothetical protein -
  SMA_2181 recF 2114342..2115436 (+) 1095 CCF03472.1 DNA recombination and repair protein RecF Machinery gene
  SMA_2182 - 2115499..2116365 (-) 867 CCF03473.1 putative sugar uptake protein -
  SMA_2183 guaB 2116606..2118087 (-) 1482 CCF03474.1 Inosine-5'-monophosphate dehydrogenase -
  SMA_2184 trpS 2118346..2119368 (-) 1023 CCF03475.1 Tryptophanyl-tRNA synthetase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41836.00 Da        Isoelectric Point: 7.1290

>NTDB_id=20701 SMA_2181 CCF03472.1 2114342..2115436(+) (recF) [Streptococcus macedonicus ACA-DC 198]
MWIQKITLKNYRNYLTSELEFSPGLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRTDKELIHFDAKELLVSGILQRSSGT
VPLDISLSSKGRVTKVNHLKQAKLSDYIGVMTIVLFAPEDLQLIKGAPSLRRKFIDIDLGQIKPIYLADLSNYNHVLKQR
NTYLKTAEKVDTDFLAVVDEQLADFGSRVMEHRLDFISNLEKEADRYHYAISNGIEHLSIHYLSSVFFQEKDDIKPIFLK
ALQKNHQRDIFKKNTSVGPHRDDLEFFINDMPANFGSQGQHRSLILSLKMAEIELIKTVTGDYPILLLDDVMSELDNYRQ
TELLKMIINKNVQTFITTTSLDHLSQLPDELKIFTVNQGNIQEN

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=20701 SMA_2181 CCF03472.1 2114342..2115436(+) (recF) [Streptococcus macedonicus ACA-DC 198]
ATGTGGATTCAAAAAATAACGTTAAAAAATTATCGTAACTATCTGACTAGTGAGCTTGAATTTTCTCCTGGACTTAATGT
TTTCATCGGAAAAAATGCTCAAGGAAAAACAAATTTCTTAGAAGCAATTTATTTCCTTTCTCTCACCCGCAGCCACCGCA
CACGGACAGACAAAGAGTTGATTCATTTTGATGCCAAAGAACTTCTGGTTTCTGGTATTTTACAACGTTCAAGTGGTACT
GTTCCTTTAGATATTAGTCTTTCAAGTAAGGGACGTGTTACAAAAGTCAATCATCTAAAACAAGCTAAGTTATCAGACTA
TATTGGTGTAATGACCATTGTTCTTTTTGCACCTGAAGATTTACAACTCATCAAAGGCGCTCCAAGCCTTCGTCGAAAAT
TTATTGACATTGATTTAGGGCAAATAAAGCCGATTTATTTAGCTGATTTGTCTAATTATAACCACGTGCTAAAACAGCGT
AATACTTATCTTAAAACGGCTGAAAAAGTTGATACTGATTTTTTAGCTGTGGTTGACGAGCAATTAGCTGATTTTGGTAG
CCGTGTCATGGAACATCGTTTAGATTTCATTTCTAATTTAGAAAAAGAAGCCGACCGCTATCATTATGCCATTTCAAACG
GTATTGAACATCTTAGTATCCATTATCTATCATCTGTTTTCTTCCAAGAAAAGGATGACATTAAGCCAATTTTCTTAAAA
GCTTTACAAAAAAATCATCAGCGTGATATTTTCAAAAAGAATACAAGTGTTGGTCCCCACCGTGATGATTTAGAATTTTT
CATCAATGATATGCCAGCAAATTTTGGCAGCCAAGGTCAGCACCGTAGCCTAATCTTATCACTAAAAATGGCTGAAATTG
AGTTAATAAAAACAGTAACTGGTGATTATCCTATTTTACTTTTAGATGATGTCATGAGCGAGCTTGATAATTACAGACAA
ACCGAACTCTTAAAAATGATTATTAATAAAAACGTTCAAACCTTCATTACAACAACAAGCCTCGACCACCTATCACAGCT
TCCGGACGAGTTAAAAATCTTTACAGTTAATCAAGGTAACATTCAAGAAAATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-359)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

64.56

100

0.646
  recF Bacillus subtilis subsp. subtilis str. 168

46.418

95.879

0.445

Multiple sequence alignment