Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GbCGDNIH8_RS06410 Genome accession   NZ_CP018194
Coordinates   1391280..1391798 (-) Length   172 a.a.
NCBI ID   WP_072572530.1    Uniprot ID   -
Organism   Granulibacter bethesdensis strain NIH8.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1386280..1396798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GbCGDNIH8_RS06385 (GbCGDNIH8_1216) - 1386612..1386890 (+) 279 WP_072572528.1 hypothetical protein -
  GbCGDNIH8_RS06395 (GbCGDNIH8_1217) - 1387156..1387659 (-) 504 WP_072573698.1 peptidylprolyl isomerase -
  GbCGDNIH8_RS06400 (GbCGDNIH8_1218) coaD 1387750..1388301 (-) 552 WP_072572529.1 pantetheine-phosphate adenylyltransferase -
  GbCGDNIH8_RS06405 (GbCGDNIH8_1219) gyrA 1388294..1391050 (-) 2757 WP_072573699.1 DNA gyrase subunit A -
  GbCGDNIH8_RS06410 (GbCGDNIH8_1220) ssb 1391280..1391798 (-) 519 WP_072572530.1 single-stranded DNA-binding protein Machinery gene
  GbCGDNIH8_RS06415 (GbCGDNIH8_1221) uvrA 1391966..1394836 (+) 2871 WP_072572531.1 excinuclease ABC subunit UvrA -
  GbCGDNIH8_RS06420 (GbCGDNIH8_1223) - 1395155..1395361 (+) 207 WP_072572532.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18476.27 Da        Isoelectric Point: 6.4931

>NTDB_id=206984 GbCGDNIH8_RS06410 WP_072572530.1 1391280..1391798(-) (ssb) [Granulibacter bethesdensis strain NIH8.1]
MAGSVNKVILIGNLGRDPEVRNTQDGGKVVNFTLATSETWNDRASGERKERTEWHRVVVFNDRLADIAERYLRKGTKVYV
EGALQTRKWTDQSGQEKYTTEVVISRFRGEITMLDSRSGGEGAGEGGGYRAAPAQRAPSGGSGFGGGSSRPASGGGGWEP
SHGGDLDDEIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=206984 GbCGDNIH8_RS06410 WP_072572530.1 1391280..1391798(-) (ssb) [Granulibacter bethesdensis strain NIH8.1]
ATGGCTGGCAGTGTCAATAAGGTTATTCTGATCGGTAATCTCGGGCGCGACCCCGAGGTTCGCAATACCCAGGATGGCGG
CAAGGTGGTGAATTTTACGCTCGCGACCAGCGAAACGTGGAATGATCGTGCTTCCGGTGAGCGGAAAGAACGCACCGAAT
GGCATCGTGTGGTGGTCTTTAATGACCGGTTGGCGGATATCGCCGAACGCTATCTGCGCAAGGGCACCAAGGTCTATGTC
GAAGGGGCGCTTCAGACCCGGAAATGGACCGACCAGTCCGGCCAGGAAAAATACACCACTGAGGTCGTGATCAGCCGATT
CCGTGGTGAGATCACCATGCTGGACAGCCGCTCCGGCGGGGAAGGGGCTGGTGAAGGCGGTGGTTATCGGGCTGCTCCTG
CCCAGCGTGCGCCATCCGGCGGCAGCGGATTTGGGGGGGGCAGCAGCCGCCCAGCATCCGGTGGGGGTGGCTGGGAGCCG
TCTCATGGTGGCGATCTGGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.059

100

0.512
  ssb Vibrio cholerae strain A1552

49.425

100

0.5
  ssb Neisseria gonorrhoeae MS11

43.478

100

0.465
  ssb Neisseria meningitidis MC58

42.935

100

0.459

Multiple sequence alignment