Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   BSR20_RS06945 Genome accession   NZ_CP018189
Coordinates   1529309..1530310 (-) Length   333 a.a.
NCBI ID   WP_049528972.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1524309..1535310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS06925 (BSR20_06990) - 1525010..1525465 (+) 456 WP_049528980.1 YueI family protein -
  BSR20_RS06930 (BSR20_06995) - 1525584..1527131 (+) 1548 WP_231593843.1 IS1182 family transposase -
  BSR20_RS06935 (BSR20_07000) - 1527054..1528169 (-) 1116 WP_049528977.1 glycerate kinase -
  BSR20_RS06940 (BSR20_07005) - 1528182..1529249 (-) 1068 WP_049528974.1 MmcQ/YjbR family DNA-binding protein -
  BSR20_RS06945 (BSR20_07010) ccpA 1529309..1530310 (-) 1002 WP_049528972.1 catabolite control protein A Regulator
  BSR20_RS06950 (BSR20_07015) - 1530624..1531709 (+) 1086 WP_014633399.1 M24 family metallopeptidase -
  BSR20_RS06955 (BSR20_07020) - 1531806..1532174 (-) 369 WP_002886108.1 S1 RNA-binding domain-containing protein -
  BSR20_RS06960 (BSR20_07025) - 1532176..1533582 (-) 1407 WP_049528968.1 Cof-type HAD-IIB family hydrolase -
  BSR20_RS06965 (BSR20_07030) smpB 1533729..1534193 (-) 465 WP_002885905.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36619.52 Da        Isoelectric Point: 5.4827

>NTDB_id=206927 BSR20_RS06945 WP_049528972.1 1529309..1530310(-) (ccpA) [Streptococcus salivarius strain ICDC3]
MNTDETITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFA
TLARGIDDIATMYKYNIVLASSDENDDHEVTVINSLFAKQVDGIIFMGYHLTEKIRAEFSRTRTPIVLAGTVDLEHQLPS
VNIDYKAAVEDSVTQLAKSNEKVAFVSGPLIDDINGKLRLAGYKAGLEKNNLRYNEGLVFEAKYSYKDGFDLAQRVLNSG
ATAAYVGEDELAAGLLNGLFAAGKSVPEDFEIITSNDSPITSYTRPNLSSINHPLYDLGAVSMRMLTKIMNKEELEEKDV
ILNHGLTLRQSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=206927 BSR20_RS06945 WP_049528972.1 1529309..1530310(-) (ccpA) [Streptococcus salivarius strain ICDC3]
ATGAATACTGATGAAACAATTACTATATACGACGTTGCGCGTGAAGCAGGTGTTTCGATGGCGACTGTGTCTCGTGTGGT
AAATGGAAATAAAAATGTAAAAGAAAACACCCGAAAAAAAGTGCTTGAGGTCATTGATCGTTTGGATTACCGTCCAAATG
CGGTTGCGCGTGGCTTGGCGAGTAAGAAAACCACTACTGTAGGAGTTGTTATTCCAAATATTGCTAATAGTTATTTTGCT
ACTTTAGCAAGGGGGATTGATGATATTGCAACCATGTACAAGTACAATATTGTTCTTGCATCTAGTGATGAAAATGACGA
TCACGAAGTTACCGTGATTAACTCTCTATTTGCCAAACAAGTAGATGGTATCATCTTCATGGGTTACCACTTGACGGAAA
AAATTCGTGCAGAATTTTCTCGTACTCGTACGCCGATTGTCCTAGCAGGAACAGTGGACCTCGAACACCAATTACCGAGT
GTTAACATAGACTATAAAGCTGCCGTTGAGGATTCTGTAACGCAGCTTGCTAAAAGTAATGAAAAGGTTGCTTTTGTATC
AGGACCACTAATTGATGATATTAATGGTAAGCTCCGTCTAGCTGGTTATAAGGCTGGACTTGAAAAGAATAATTTGCGCT
ACAATGAAGGACTTGTCTTTGAAGCTAAATATAGCTATAAAGACGGCTTTGATTTAGCACAACGTGTCTTGAACTCTGGT
GCCACTGCTGCCTATGTTGGGGAAGATGAATTGGCTGCGGGTCTCTTGAATGGCCTCTTTGCTGCAGGTAAATCTGTTCC
AGAAGACTTCGAAATCATCACAAGCAATGATTCACCAATTACAAGTTATACACGTCCAAACCTTTCTAGTATTAATCATC
CTCTCTATGATTTAGGGGCGGTTAGCATGCGTATGTTGACTAAAATCATGAATAAGGAAGAGCTTGAAGAAAAAGATGTT
ATTCTTAATCATGGTCTTACCTTACGTCAGTCAACAAAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(182-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

77.177

100

0.772
  ccpA Streptococcus pneumoniae D39

76.276

100

0.763
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.891

99.399

0.556

Multiple sequence alignment