Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BSR20_RS02130 Genome accession   NZ_CP018189
Coordinates   397536..399314 (+) Length   592 a.a.
NCBI ID   WP_045769269.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 392536..404314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS02110 (BSR20_02100) - 393281..394528 (+) 1248 WP_231593857.1 YfhO family protein -
  BSR20_RS02115 (BSR20_02105) - 394688..395098 (+) 411 WP_014633541.1 peptide deformylase -
  BSR20_RS02120 (BSR20_02110) rcrR 395285..395728 (+) 444 WP_002885568.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  BSR20_RS02125 (BSR20_02115) rcrP 395732..397546 (+) 1815 WP_070850533.1 ABC transporter ATP-binding protein Regulator
  BSR20_RS02130 (BSR20_02120) rcrQ 397536..399314 (+) 1779 WP_045769269.1 ABC transporter ATP-binding protein Regulator
  BSR20_RS02135 (BSR20_02125) - 399422..400045 (+) 624 WP_045769268.1 GNAT family N-acetyltransferase -
  BSR20_RS02140 (BSR20_02130) - 400193..400816 (+) 624 WP_156209468.1 GTP pyrophosphokinase family protein -
  BSR20_RS02145 (BSR20_02135) - 400818..401495 (+) 678 WP_038675394.1 response regulator transcription factor -
  BSR20_RS02150 (BSR20_02140) - 401509..402732 (+) 1224 WP_045769266.1 sensor histidine kinase -
  BSR20_RS02155 (BSR20_02145) pyrH 402970..403707 (+) 738 WP_002885551.1 UMP kinase -
  BSR20_RS02160 (BSR20_02150) frr 403722..404279 (+) 558 WP_002886708.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65115.09 Da        Isoelectric Point: 5.1069

>NTDB_id=206904 BSR20_RS02130 WP_045769269.1 397536..399314(+) (rcrQ) [Streptococcus salivarius strain ICDC3]
MENKPKTSSYKRLKPYIKGFQIPFVLAIFGAIISAVITVIGPDKLKEITNTITEGITPTKMGTIPGIDLDKVASIAMTLA
VLYAISAIVGYLQSFTVATVTQRFSQRFRTAIQKKINSVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSVL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNAAQESSQAFKG
LNDKLYKSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAIKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGRIFEFLEEKDMDNESAKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDQGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIAAAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAADGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=206904 BSR20_RS02130 WP_045769269.1 397536..399314(+) (rcrQ) [Streptococcus salivarius strain ICDC3]
ATGGAAAATAAGCCAAAAACATCATCCTATAAACGCTTAAAACCCTATATTAAAGGTTTCCAAATTCCGTTTGTCCTTGC
GATTTTTGGAGCAATTATTTCAGCGGTCATTACAGTTATTGGACCAGATAAGCTTAAAGAAATTACCAATACTATTACTG
AAGGGATTACACCTACTAAAATGGGAACGATTCCAGGCATTGATTTGGACAAGGTAGCAAGTATTGCTATGACCTTGGCT
GTTCTCTATGCCATTTCAGCCATTGTGGGTTACCTACAAAGCTTTACGGTTGCGACAGTTACACAACGCTTTTCACAACG
TTTCCGTACAGCTATCCAAAAGAAAATCAACAGTGTCCCTCTTAATTATTTCGATAGTCACTCTCAAGGGGATACCCTCT
CTCGTGTGACCAATGACGTTGACCTTTTGGGACAATCGCTTAGCCAAGGGTTAGGTACCTTGATTACTTCAAGTGTTCTC
TTGGTGGCAGCCATTATTATGATGTTCTACTCAAATGTCACTATGGCTTTCACTGCGATTGGTTCAGTCTTGATAGGGTT
TGTTCTAGTAGCCTTCATCATGGGCTTCTCACAACCCCTTTTCAAACGCCAACAAGAAAATTTGGCTAATATTAATGGTT
ATATTGAAGAAATCTACACAGGTCAAGCAGTCGTAACGAGTTACAATGCTGCTCAAGAGAGCAGTCAAGCTTTCAAGGGA
CTTAATGATAAACTCTATAAATCGATGTGGCAATCACAGTTTATCTCAGGTATTATGATGCCACTTATGATTTTCATTGG
GAACTTTGGTTATGTTATGGTCTGTCTTGTGGGTGCCATCAAAGTTATTGATGGTAGCTTGACGATTGGTGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTCTCCCAACCTCTTTCTCAAATTGCCCAAGGGATTACACAACTCCAATCAGCCACT
GCAGCCATTGGCCGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACAACGAGTCAGCTAAGACAGCTGAGTTGACAGA
TACTAAAGGTCAAGTAGTCTTTGACCATGTTTCCTTTGGTTATACTCCTGAAAAGACTATTATTCATGACTTTTCAGCTC
TTGCTAAACCAGGTCAAAAGATTGCGATTGTTGGTCCAACGGGTGCTGGTAAGACGACTATTGTTAACCTGCTTATGAAG
TTCTATAACATCGACCAAGGTCGTATCACCATTGACGGTGTGGATACTAACGACATGAAACGTGAAACTGTTCATGATCA
ATTCTCTATGGTGCTTCAAGACACTTGGCTCTTTGAAGGTACTATTCGTGATAATTTGATTTACAACCAAGAGAATATTT
CTGATGAGCAAGTTATTGCTGCAGCTAAGGCTGTCGGTGTTCACCACTTCATCACCACACTTCCAAAGGGGTATGATACT
TATTTGGATGATTCTGTGACCTTATCAGTTGGTCAGAAACAGCTCTTGACCATTGCGCGTGCGCTTCTTAAGGACGCCCC
TCTTCTTATCTTGGATGAAGCGACATCATCAGTTGACACCCGAACAGAAGAATTGATTCAAAAAGCCATGGACAAGCTTA
TGGAAGGTCGGACTTCCTTTGTCATTGCTCACCGCTTATCAACCATTCGAAATGCTGACCTTATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGCAATCATGATGAGCTCATGGCAGCAGATGGTTTCTATGCTGATCTTTATAATAGTCAATT
TACAGAAGAAGTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.919

100

0.689

Multiple sequence alignment